A protocol for high-throughput screening of histone lysine demethylase 4 inhibitors using TR-FRET assay

被引:2
作者
Wu, Qiong [1 ]
Lin, Wenwei [2 ]
Li, Zhen-Mei [3 ]
Rankovic, Zoran [2 ]
White, Stephen W. [3 ,4 ]
Chen, Taosheng [2 ]
Yang, Jun [1 ]
机构
[1] St Jude Childrens Res Hosp, Dept Surg, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[2] St Jude Childrens Res Hosp, Dept Chem Biol & Therapeut, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[3] St Jude Childrens Res Hosp, Dept Struct Biol, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[4] St Jude Childrens Res Hosp, Grad Sch Biomed Sci, 262 Danny Thomas Pl, Memphis, TN 38105 USA
来源
STAR PROTOCOLS | 2021年 / 2卷 / 03期
关键词
Cancer; Chemistry; High Throughput Screening; Molecular/Chemical Probes; Protein Biochemistry; Protein expression and purification; Structural Biology;
D O I
10.1016/j.xpro.2021.100702
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Identification of diverse chemotypes of selective KDM4 inhibitors is important for exploring and validating the roles of KDM4s in the pathogenesis of human disease and for developing therapies. Here, we report a protocol for high -throughput screening of KDM4 inhibitors using TR-FRET demethylation func-tional assay. We describe this protocol for screen of KDM4B inhibitors, which can be modified to screen inhibitors of other JmjC-domain-containing KDMs. For complete details on the use and execution of this protocol, please refer to Singh et al. (2021).
引用
收藏
页数:10
相关论文
共 9 条
  • [1] KDM4B as a Target for Prostate Cancer: Structural Analysis and Selective Inhibition by a Novel Inhibitor
    Chu, Chia-Han
    Wang, Ling-Yu
    Hsu, Kai-Cheng
    Chen, Chung-Chin
    Cheng, Hsing-Hung
    Wang, Szu-Min
    Wu, Chien-Ming
    Chen, Tsan-Jan
    Li, Ling-Ting
    Liu, Ruiwu
    Hung, Chiu-Lien
    Yang, Jing-Moon
    Kung, Hsing-Jien
    Wang, Wen-Ching
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2014, 57 (14) : 5975 - 5985
  • [2] Cui Jimmy, 2011, Curr Chem Genomics, V5, P42, DOI 10.2174/1875397301105010042
  • [3] Levin May, 2018, Oncotarget, V9, P16861, DOI 10.18632/oncotarget.24717
  • [4] Development of BODIPY FL VH032 as a High-Affinity and Selective von Hippel-Lindau E3 Ligase Fluorescent Probe and Its Application in a Time-Resolved Fluorescence Resonance Energy-Transfer Assay
    Lin, Wenwei
    Li, Yongtao
    Yang, Lei
    Chen, Taosheng
    [J]. ACS OMEGA, 2021, 6 (01): : 680 - 695
  • [5] Evaluating and evolving a screening library in academia: the St Jude approach
    Nishiguchi, Gisele
    Das, Sourav
    Ochoada, Jason
    Long, Heather
    Lee, Richard E.
    Rankovic, Zoran
    Shelat, Anang A.
    [J]. DRUG DISCOVERY TODAY, 2021, 26 (04) : 1060 - 1069
  • [6] 17-DMAG dually inhibits Hsp90 and histone lysine demethylases in alveolar rhabdomyosarcoma
    Singh, Shivendra
    Abu-Zaid, Ahmed
    Lin, Wenwei
    Low, Jonathan
    Abdolvahabi, Alireza
    Jin, Hongjian
    Wu, Qiong
    Cooke, Bailey
    Fang, Jie
    Bowling, John
    Vaithiyalingam, Sivaraja
    Currier, Duane
    Yun, Mi-Kyung
    Fernando, Dinesh M.
    Maier, Julie
    Tillman, Heather
    Bulsara, Purva
    Lu, Zhaohua
    Das, Sourav
    Shelat, Anang
    Li, Zhenmei
    Young, Brandon
    Lee, Richard
    Rankovic, Zoran
    Murphy, Andrew J.
    White, Stephen W.
    Davidoff, Andrew M.
    Chen, Taosheng
    Yang, Jun
    [J]. ISCIENCE, 2021, 24 (01)
  • [7] Yang J, 2017, CANCER RES, V77, P4626, DOI [10.1158/0008-5472.can-16-0826, 10.1158/0008-5472.CAN-16-0826]
  • [8] Structural basis for substrate recognition and chemical inhibition of oncogenic MAGE ubiquitin ligases
    Yang, Seung Wook
    Huang, Xin
    Lin, Wenwei
    Min, Jaeki
    Miller, Darcie J.
    Mayasundari, Anand
    Rodrigues, Patrick
    Griffith, Elizabeth C.
    Gee, Clifford T.
    Li, Lei
    Li, Wei
    Lee, Richard E.
    Rankovic, Zoran
    Chen, Taosheng
    Potts, Patrick Ryan
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [9] A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    Zhang, JH
    Chung, TDY
    Oldenburg, KR
    [J]. JOURNAL OF BIOMOLECULAR SCREENING, 1999, 4 (02) : 67 - 73