The role of Asp116 in the reductive cleavage of dioxygen to water in CotA laccase: assistance during the proton-transfer mechanism

被引:29
作者
Silva, Catarina S. [1 ]
Damas, Joao M. [1 ]
Chen, Zhenjia [1 ]
Brissos, Vania [1 ]
Martins, Ligia O. [1 ]
Soares, Claudio M. [1 ]
Lindley, Peter F. [1 ]
Bento, Isabel [1 ]
机构
[1] Univ Nova Lisboa, Inst Tecnol Quim & Biol, P-2780157 Oeiras, Portugal
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2012年 / 68卷
关键词
laccases; trinuclear cluster; dioxygen reduction; protonation simulations; electrostatic calculations; MULTICOPPER OXIDASE FET3P; O-O BOND; BACILLUS-SUBTILIS; CRYSTAL-STRUCTURE; ENDOSPORE COAT; MELANOCARPUS-ALBOMYCES; PEROXIDE INTERMEDIATE; 4-ELECTRON REDUCTION; COPPER SITE; PROTEINS;
D O I
10.1107/S0907444911054503
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Multi-copper oxidases constitute a family of proteins that are capable of coupling the one-electron oxidation of four substrate equivalents to the four-electron reduction of dioxygen to two molecules of water. The main catalytic stages occurring during the process have already been identified, but several questions remain, including the nature of the protonation events that take place during the reductive cleavage of dioxygen to water. The presence of a structurally conserved acidic residue (Glu498 in CotA laccase from Bacillus subtilis) at the dioxygen-entrance channel has been reported to play a decisive role in the protonation mechanisms, channelling protons during the reduction process and stabilizing the site as a whole. A second acidic residue that is sequentially conserved in multi-copper oxidases and sited within the exit channel (Asp116 in CotA) has also been identified as being important in the protonation process. In this study, CotA laccase has been used as a model system to assess the role of Asp116 in the reduction process of dioxygen to water. The crystal structures of three distinct mutants, D116E, D116N and D116A, produced by site-saturation mutagenesis have been determined. In addition, theoretical calculations have provided further support for a role of this residue in the protonation events.
引用
收藏
页码:186 / 193
页数:8
相关论文
共 41 条
  • [1] [Anonymous], 1996, Biomolecular Simulation: the GROMOS96 Manual and User Guide
  • [2] Spectroscopic and kinetic studies of perturbed trinuclear copper clusters: The role of protons in reductive cleavage of the O-O bond in the multicopper oxidase Fet3p
    Augustine, Anthony J.
    Quintanar, Liliana
    Stoj, Christopher S.
    Kosman, Daniel J.
    Solomon, Edward I.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (43) : 13118 - 13126
  • [3] Some theoretical and computational aspects of the inclusion of proton isomerism in the protonation equilibrium of proteins
    Baptista, AM
    Soares, CM
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (01) : 293 - 309
  • [4] ELECTROSTATIC CALCULATIONS OF THE PKA VALUES OF IONIZABLE GROUPS IN BACTERIORHODOPSIN
    BASHFORD, D
    GERWERT, K
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1992, 224 (02) : 473 - 486
  • [5] Dioxygen reduction by multi-copper oxidases; a structural perspective
    Bento, I
    Martins, LO
    Lopes, GG
    Carrondo, MA
    Lindley, PF
    [J]. DALTON TRANSACTIONS, 2005, (21) : 3507 - 3513
  • [6] Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer
    Bento, Isabel
    Silva, Catarina S.
    Chen, Zhenjia
    Martins, Ligia O.
    Lindley, Peter F.
    Soares, Claudio M.
    [J]. BMC STRUCTURAL BIOLOGY, 2010, 10
  • [7] Brissos V., 2012, UNPUB
  • [8] The role of Glu498 in the dioxygen reactivity of CotA-laccase from Bacillus subtilis
    Chen, Zhenjia
    Durao, Paulo
    Silva, Catarina S.
    Pereira, Manuela M.
    Todorovic, Smilja
    Hildebrandt, Peter
    Bento, Isabel
    Lindley, Peter F.
    Martins, Ligia O.
    [J]. DALTON TRANSACTIONS, 2010, 39 (11) : 2875 - 2882
  • [9] Industrial and biotechnological applications of laccases: A review
    Couto, Susana Rodriguez
    Herrera, Jose Luis Toca
    [J]. BIOTECHNOLOGY ADVANCES, 2006, 24 (05) : 500 - 513
  • [10] Perturbations of the T1 copper site in the CotA laccase from Bacillus subtilis:: structural, biochemical, enzymatic and stability studies
    Durao, P
    Bento, I
    Fernandes, AT
    Melo, EP
    Lindley, PF
    Martins, LO
    [J]. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2006, 11 (04): : 514 - 526