SorghumBase: a web-based portal for sorghum genetic information and community advancement

被引：24

作者：

Gladman, Nicholas ^{[1
]}

Olson, Andrew ^{[1
]}

Wei, Sharon ^{[1
]}

Chougule, Kapeel ^{[1
]}

Lu, Zhenyuan ^{[1
]}

Tello-Ruiz, Marcela ^{[1
]}

Meijs, Ivar ^{[1
]}

Van Buren, Peter ^{[1
]}

Jiao, Yinping ^{[3
]}

Wang, Bo ^{[1
]}

Kumar, Vivek ^{[1
]}

Kumari, Sunita ^{[1
]}

Zhang, Lifang ^{[1
]}

Burke, John ^{[2
]}

Chen, Junping ^{[2
]}

Burow, Gloria ^{[2
]}

Hayes, Chad ^{[2
]}

Emendack, Yves ^{[2
]}

Xin, Zhanguo ^{[2
]}

Ware, Doreen ^{[1
,4
]}

机构：

[1] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

[2] USDA ARS, Plant Stress & Germplasm Dev Unit, Cropping Syst Res Lab, Lubbock, TX 79415 USA

[3] Texas Tech Univ, Inst Genom Crop Abiot Stress Tolerance, Dept Plant & Soil Sci, Lubbock, TX 79409 USA

[4] Cornell Univ, NEA Robert Holley Ctr Agr & Hlth, USDA ARS, Ithaca, NY 14853 USA

来源：

PLANTA | 2022年 / 255卷 / 02期

基金：

美国农业部; 美国国家卫生研究院;

关键词：

Genomic; Genetic; Molecular; Breeding; Resource; Sorghum; REFERENCE GENOME; ACID SOILS; BICOLOR; ASSOCIATION; RESOURCE; MAIZE; DOMESTICATION; IMPROVEMENT; LANDRACES; DIVERSITY;

D O I：

10.1007/s00425-022-03821-6

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Public research and development in agriculture rely on proper data and resource sharing within stakeholder communities. For plant breeders, agronomists, molecular biologists, geneticists, and bioinformaticians, centralizing desirable data into a user-friendly hub for crop systems is essential for successful collaborations and breakthroughs in germplasm development. Here, we present the SorghumBase web portal (https://www.sorghumbase.org ), a resource for the sorghum research community. SorghumBase hosts a wide range of sorghum genomic information in a modular framework, built with open-source software, to provide a sustainable platform. This initial release of SorghumBase includes: (1) five sorghum reference genome assemblies in a pan-genome browser; (2) genetic variant information for natural diversity panels and ethyl methanesulfonate (EMS)-induced mutant populations; (3) search interface and integrated views of various data types; (4) links supporting interconnectivity with other repositories including genebank, QTL, and gene expression databases; and (5) a content management system to support access to community news and training materials. SorghumBase offers sorghum investigators improved data collation and access that will facilitate the growth of a robust research community to support genomics-assisted breeding.

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