GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings

被引:6
作者
Xie, Zhiwen [1 ]
Zhu, Runjie [2 ]
Liu, Jin [1 ]
Zhou, Guangyou [3 ]
Huang, Jimmy Xiangji [4 ]
Cui, Xiaohui [5 ]
机构
[1] Wuhan Univ, Sch Comp Sci, Wuhan 430072, Peoples R China
[2] York Univ, Lassonde Sch Engn, Toronto, ON, Canada
[3] Cent China Normal Univ, Sch Comp Sci, Wuhan 430079, Peoples R China
[4] York Univ, Sch Informat Technol, Toronto, ON, Canada
[5] Wuhan Univ, Sch Cyber Sci & Engn, Wuhan 430072, Peoples R China
基金
国家重点研发计划; 加拿大自然科学与工程研究理事会; 中国国家自然科学基金;
关键词
Natural Language Processing; Text Mining; Knowledge Graph; COVID-19; REPRESENTATION;
D O I
10.1016/j.ins.2022.07.031
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
In response to fighting COVID-19 pandemic, researchers in machine learning and artificial intelligence have constructed some medical knowledge graphs (KG) based on existing COVID-19 datasets, however, these KGs contain a considerable amount of semantic rela-tions which are incomplete or missing. In this paper, we focus on the task of knowledge graph embedding (KGE), which serves an important solution to infer the missing relations. In the past, there have been a collection of knowledge graph embedding models with dif-ferent scoring functions to learn entity and relation embeddings published. However, these models share the same problems of rarely taking important features of KG like attribute features, other than relation triples, into account, while dealing with the heterogeneous, complex and incomplete COVID-19 medical data. To address the above issue, we propose a graph feature collection network (GFCNet) for COVID-19 KGE task, which considers both neighbor and attribute features in KGs. The extensive experiments conducted on the COVID-19 drug KG dataset show promising results and prove the effectiveness and effi-ciency of our proposed model. In addition, we also explain the future directions of deepen-ing the study on COVID-19 KGE task.(c) 2022 Elsevier Inc. All rights reserved.
引用
收藏
页码:1557 / 1571
页数:15
相关论文
共 62 条
[1]   Classification of COVID-19 in chest X-ray images using DeTraC deep convolutional neural network [J].
Abbas, Asmaa ;
Abdelsamea, Mohammed M. ;
Gaber, Mohamed Medhat .
APPLIED INTELLIGENCE, 2021, 51 (02) :854-864
[2]   Application of network link prediction in drug discovery [J].
Abbas, Khushnood ;
Abbasi, Alireza ;
Dong, Shi ;
Niu, Ling ;
Yu, Laihang ;
Chen, Bolun ;
Cai, Shi-Min ;
Hasan, Qambar .
BMC BIOINFORMATICS, 2021, 22 (01)
[3]  
Aggarwal Jai, 2020, P 1 WORKSH NLP COVID
[4]  
Ba J. L., 2016, arXiv, DOI 10.48550/arXiv:1607.06450
[5]  
Balazevic I, 2019, 2019 CONFERENCE ON EMPIRICAL METHODS IN NATURAL LANGUAGE PROCESSING AND THE 9TH INTERNATIONAL JOINT CONFERENCE ON NATURAL LANGUAGE PROCESSING (EMNLP-IJCNLP 2019), P5185
[6]  
Bansal T, 2019, 57TH ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS (ACL 2019), P4387
[7]  
Bellomarini L, 2020, Arxiv, DOI arXiv:2004.10119
[8]  
Bonner S, 2022, Arxiv, DOI arXiv:2105.10488
[9]  
Bordes A., 2013, ADV NEURAL INFORM PR, P2787
[10]   TransGCN:Coupling Transformation Assumptions with Graph Convolutional Networks for Link Prediction [J].
Cai, Ling ;
Yan, Bo ;
Mai, Gengchen ;
Janowicz, Krzysztof ;
Zhu, Rui .
PROCEEDINGS OF THE 10TH INTERNATIONAL CONFERENCE ON KNOWLEDGE CAPTURE (K-CAP '19), 2019, :131-138