The chloroplast genome sequence of an aquatic plant, Sparganium eurycarpum subsp. coreanum (Typhaceae)

被引:3
作者
Gil, Hee-Young [1 ]
Ha, Young-Ho [1 ]
Choi, Kyoung Su [1 ]
Lee, Jung Sim [1 ]
Chang, Kae Sun [1 ]
Choi, Kyung [1 ]
机构
[1] Korea Natl Arboretum, Div Forest Biodivers, 415 Gwangneungsumogwon Ro, Pochon 11186, Gyeonggi Do, South Korea
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
关键词
Chloroplast genome; Poales; Typhaceae; Sparganium eurycarpum subsp. coreanum; GENUS SPARGANIUM;
D O I
10.1080/23802359.2019.1572471
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete chloroplast genome sequence of Sparganium eurycarpum subsp. coreanum was determined. The genome size was 161,761 bp in length with 36.9% GC content. It included a pair of inverted repeats (IRa and IRb) of 26,886 bp, which were separated by small single copy (SSC: 19,029 bp) and large single copy (LSC: 88,960 bp) regions. The cp genome contained 112 genes, including 79 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. Phylogenetic analysis of the combined 79 protein-coding genes showed that S. eurycarpum subsp. coreanum was most closely related to Typha latifolia.
引用
收藏
页码:684 / 685
页数:2
相关论文
共 11 条
  • [1] [Anonymous], 2014, A Field Guide to Aquatic Plants of Japan
  • [2] COOK CDK, 1986, BOT HELV, V96, P213
  • [3] COOK CDK, 1987, BOT HELV, V97, P1
  • [4] Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
    Guisinger, Mary M.
    Chumley, Timothy W.
    Kuehl, Jennifer V.
    Boore, Jeffrey L.
    Jansen, Robert K.
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 2010, 70 (02) : 149 - 166
  • [5] Kaul RB., 2000, FLORA N AM N MEXICO, P270
  • [6] Kun S., 2010, Flora of China, V23, P158
  • [7] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [8] Ohwi J, 1965, FLORA JAPAN, P119
  • [9] The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    Schattner, P
    Brooks, AN
    Lowe, TM
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W686 - W689
  • [10] SYSTEMATICS, BIOGEOGRAPHY, AND CHARACTER EVOLUTION OF SPARGANIUM (TYPHACEAE): DIVERSIFICATION OF A WIDESPREAD, AQUATIC LINEAGE
    Sulman, Joshua D.
    Drew, Bryan T.
    Drummond, Chloe
    Hayasaka, Eisuke
    Sytsma, Kenneth J.
    [J]. AMERICAN JOURNAL OF BOTANY, 2013, 100 (10) : 2023 - 2039