Genome-Wide Analysis of APETALA2/Ethylene-Responsive Factor (AP2/ERF) Gene Family in Barley (Hordeum vulgare L.)

被引:87
|
作者
Guo, Baojian [1 ]
Wei, Yafeng [2 ]
Xu, Ruibin [3 ]
Lin, Shen [1 ]
Luan, Haiye [1 ]
Lv, Chao [1 ]
Zhang, Xinzhong [1 ]
Song, Xiyun [3 ]
Xu, Rugen [1 ]
机构
[1] Yangzhou Univ, Coinnovat Ctr Modern Prod Technol Grain Crops, Jiangsu Key Lab Crop Genet & Physiol, Key Lab Plant Funct Genom,Minist Educ,Barley Res, Yangzhou, Jiangsu, Peoples R China
[2] JiangSu Yanjiang Inst Agr Sci, Nantong, Peoples R China
[3] Qingdao Agr Univ, Coll Agron & Plant Protect, Qingdao, Peoples R China
来源
PLOS ONE | 2016年 / 11卷 / 09期
基金
中国国家自然科学基金;
关键词
SIGNAL-TRANSDUCTION; SALT STRESS; TRANSCRIPTION FACTORS; EXPRESSION; ARABIDOPSIS; TOLERANCE; DROUGHT; RICE; DEHYDRATION; RESPONSES;
D O I
10.1371/journal.pone.0161322
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
APETALA2/Ethylene-Responsive Factor (AP2/ERF) gene family is plant specific transcription factor. It plays critical roles in development process, tolerance to biotic and abiotic stresses, and responses to plant hormones. However, limited data are available on the contributions of AP2/ERF gene family in barley (Hordeum vulgare L.). In the present study, 121 HvAP2/ERF genes in barley were identified by using bioinformatics methods. A total of 118 HvAP2/ERF (97.5%) genes were located on seven chromosomes. According to phylogenetic classification of AP2/ERF family in Arabidopsis, HvAP2/ERF proteins were divided into AP2 (APETALA2), RAV ( Related to ABI3/VP), DREB (dehydration responsive element binding), ERF (ethylene responsive factors) and soloist sub families. The analysis of duplication events indicated that tandem repeat and segmental duplication contributed to the expansion of the AP2/ERF family in barley. HvDREB1s/2s genes displayed various expression patterns under abiotic stress and phytohormone. Taken together, the data generated in this study will be useful for genome-wide analysis to determine the precise role of the HvAP2/ERF gene during barley development, abiotic stress and phytohormone responses with the ultimate goal of improving crop production.
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页数:17
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