Formamide-Based Prebiotic Synthesis of Nucleobases: A Kinetically Accessible Reaction Route

被引:40
|
作者
Sponer, Judit E. [1 ,2 ]
Mladek, Arnost [1 ]
Sponer, Jiri [1 ,2 ]
Fuentes-Cabrera, Miguel [3 ,4 ]
机构
[1] Acad Sci Czech Republ, Inst Biophys, CZ-61265 Brno, Czech Republic
[2] Masaryk Univ, CEITEC Cent European Inst Technol, CZ-62500 Brno, Czech Republic
[3] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37831 USA
[4] Oak Ridge Natl Lab, Comp Sci & Math Div, Oak Ridge, TN 37831 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2012年 / 116卷 / 01期
关键词
CHEMICAL EVOLUTION; HYDROGEN-CYANIDE; RING FORMATION; ADENINE; ORIGIN; PURINE; MECHANISM; ENERGIES; DEGRADATION; CYTOSINE;
D O I
10.1021/jp209886b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Synthesis of nucleobases in nonaqueous environments is an alternative way for the emergence of terrestrial life, which could solve the fundamental problem connected to the hydrolytic instability of nucleic acid components in an aqueous environment. In this contribution, we present a plausible reaction route for the prebiotic synthesis of nucleobases in formamide, which does not require participation of the formamide trimer and aminoimidazole-carbonitrile. intermediates. The computed activation energy of the proposed pathway is noticeably higher than that of the HCN-based synthetic route, but it is still feasible under the experimental conditions of the Saladino synthesis. We show that, albeit both the pyrimidine and purine ring formation utilizes the undissociated form of formamide, the dehydration product of formamide, HCN, may also play a key role in the mechanism. The rate determining step of the entire reaction path is the cyclization of the diaza-pentanimine precursor. The subsequent formation of the imidazole ring proceeds with a moderate activation energy. Our calculations thus demonstrate that the experimentally suggested reaction path without the involvement of aminoimidazole-carbonitrile intermediates is also a viable alternative for the nonaqueous synthesis of nucleobases.
引用
收藏
页码:720 / 726
页数:7
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