Effect of macromolecular crowding on the rate of diffusion-limited enzymatic reaction
被引:15
作者:
Agrawal, Manish
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机构:
Indian Inst Technol, Dept Biotechnol, Gauhati 781039, IndiaIndian Inst Technol, Dept Biotechnol, Gauhati 781039, India
Agrawal, Manish
[1
]
Santra, S. B.
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机构:
Indian Inst Technol, Dept Phys, Gauhati 781039, IndiaIndian Inst Technol, Dept Biotechnol, Gauhati 781039, India
Santra, S. B.
[2
]
Anand, Rajat
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机构:
Indian Inst Technol, Dept Biotechnol, Gauhati 781039, IndiaIndian Inst Technol, Dept Biotechnol, Gauhati 781039, India
Anand, Rajat
[1
]
Swaminathan, Rajaram
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机构:
Indian Inst Technol, Dept Biotechnol, Gauhati 781039, IndiaIndian Inst Technol, Dept Biotechnol, Gauhati 781039, India
Swaminathan, Rajaram
[1
]
机构:
[1] Indian Inst Technol, Dept Biotechnol, Gauhati 781039, India
[2] Indian Inst Technol, Dept Phys, Gauhati 781039, India
来源:
PRAMANA-JOURNAL OF PHYSICS
|
2008年
/
71卷
/
02期
关键词:
enzyme kinetics;
Monte Carlo;
percolation;
random walk;
obstacle;
D O I:
10.1007/s12043-008-0169-y
中图分类号:
O4 [物理学];
学科分类号:
0702 ;
摘要:
The cytoplasm of a living cell is crowded with several macromolecules of different shapes and sizes. Molecular diffusion in such a medium becomes anomalous due to the presence of macromolecules and diffusivity is expected to decrease with increase in macromolecular crowding. Moreover, many cellular processes are dependent on molecular diffusion in the cell cytosol. The enzymatic reaction rate has been shown to be affected by the presence of such macromolecules. A simple numerical model is proposed here based on percolation and diffusion in disordered systems to study the effect of macromolecular crowding on the enzymatic reaction rates. The model qualitatively explains some of the experimental observations.
机构:
Univ Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, NetherlandsUniv Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, Netherlands
Asaad, N
Engberts, JBFN
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机构:
Univ Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, NetherlandsUniv Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, Netherlands
机构:
Univ Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, NetherlandsUniv Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, Netherlands
Asaad, N
Engberts, JBFN
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h-index: 0
机构:
Univ Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, NetherlandsUniv Groningen, Phys Organ Chem Unit, Stratingh Inst, NL-9747 AG Groningen, Netherlands