Crystal structure of Arabidopsis thaliana calmodulin7 and insight into its mode of DNA binding

被引:25
作者
Kumar, Sanjeev [1 ]
Mazumder, Mohit [1 ]
Gupta, Nisha [2 ]
Chattopadhyay, Sudip [2 ]
Gourinath, Samudrala [1 ]
机构
[1] Jawaharlal Nehru Univ, Sch Life Sci, New Delhi 110067, India
[2] Natl Inst Technol, Dept Biotechnol, Durgapur, India
关键词
CaM; molecular modeling; protein crystallization; protein-DNA interaction; WEB SERVER; CALCIUM-BINDING; PROTEIN; RECOGNITION; REFINEMENT; MECHANISM; DREAM;
D O I
10.1002/1873-3468.12349
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Calmodulin (CaM) is a Ca2+ sensor that participates in several cellular signaling cascades by interacting with various targets, including DNA. It has been shown that Arabidopsis thaliana CaM7 (AtCaM7) interacts with Z-box DNA and functions as a transcription factor [Kushwaha R et al. (2008) Plant Cell 20, 1747-1759; Abbas N et al. (2014) Plant Cell 26, 1036-1052]. The crystal structure of AtCaM7, and a model of the AtCAM7-Z-box complex suggest that Arg-127 determines the DNA-binding ability by forming crucial interactions with the guanine base. We validated the model using biolayer interferometry, which confirmed that AtCaM7 interacts with Z-box DNA with high affinity. In contrast, the AtCaM2/3/5 isoform does not show any binding, although it differs from AtCaM7 by only a single residue.
引用
收藏
页码:3029 / 3039
页数:11
相关论文
共 44 条
  • [1] Arabidopsis CAM7 and HY5 Physically Interact and Directly Bind to the HY5 Promoter to Regulate Its Expression and Thereby Promote Photomorphogenesis
    Abbas, Nazia
    Maurya, Jay P.
    Senapati, Dhirodatta
    Gangappa, Sreeramaiah N.
    Chattopadhyay, Sudip
    [J]. PLANT CELL, 2014, 26 (03) : 1036 - 1052
  • [2] INTERACTION OF DNA WITH LYSINE-RICH POLYPEPTIDES AND PROTEINS - THE INFLUENCE OF POLYPEPTIDE COMPOSITION AND SECONDARY STRUCTURE
    AZORIN, F
    VIVES, J
    CAMPOS, JL
    JORDAN, A
    LLOVERAS, J
    PUIGJANER, L
    SUBIRANA, JA
    MAYER, R
    BRACK, A
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1985, 185 (02) : 371 - 387
  • [3] DREAM is a Ca2+-regulated transcriptional repressor
    Carrión, AM
    Link, WA
    Ledo, F
    Mellström, B
    Naranjo, JR
    [J]. NATURE, 1999, 398 (6722) : 80 - 84
  • [4] Calmodulin: a prototypical calcium sensor
    Chin, D
    Means, AR
    [J]. TRENDS IN CELL BIOLOGY, 2000, 10 (08) : 322 - 328
  • [5] CALCIUM/CALMODULIN INHIBITION OF BASIC-HELIX-LOOP-HELIX TRANSCRIPTION FACTOR DOMAINS
    CORNELIUSSEN, B
    HOLM, M
    WALTERSSON, Y
    ONIONS, J
    HALLBERG, B
    THORNELL, A
    GRUNDSTROM, T
    [J]. NATURE, 1994, 368 (6473) : 760 - 764
  • [6] The metal-binding properties of DREAM - Evidence for calcium-mediated changes in DREAM structure
    Craig, TA
    Benson, LM
    Venyaminov, SY
    Klimtchuk, ES
    Bajzer, Z
    Prendergast, FG
    Naylor, S
    Kumar, R
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (13) : 10955 - 10966
  • [7] The HADDOCK web server for data-driven biomolecular docking
    De Vries, Sjoerd J.
    van Dijk, Marc
    Bonvin, Alexandre M. J. J.
    [J]. NATURE PROTOCOLS, 2010, 5 (05) : 883 - 897
  • [8] DeLano WL, 2005, ABSTR PAP AM CHEM S, V230, pU1371
  • [9] Coot:: model-building tools for molecular graphics
    Emsley, P
    Cowtan, K
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 : 2126 - 2132
  • [10] Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes
    Gao, Xiaopan
    Zou, Tingting
    Mu, Zhixia
    Qin, Bo
    Yang, Jian
    Waltersperger, Sandro
    Wang, Meitian
    Cui, Sheng
    Jin, Qi
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (22) : 10529 - 10541