Identification and validation of a two-gene expression index for subtype classification and prognosis in Diffuse Large B-Cell Lymphoma

被引:22
作者
Xu, Qinghua [1 ,2 ,3 ,4 ,5 ]
Tan, Cong [1 ,2 ,3 ]
Ni, Shujuan [1 ,2 ,3 ]
Wang, Qifeng [1 ,2 ,3 ]
Wu, Fei [4 ,5 ]
Liu, Fang [4 ]
Ye, Xun [4 ,5 ]
Meng, Xia [4 ,5 ]
Sheng, Weiqi [1 ,2 ,3 ]
Du, Xiang [1 ,2 ,3 ]
机构
[1] Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai 200433, Peoples R China
[2] Fudan Univ, Shanghai Canc Ctr, Dept Pathol, Shanghai 200433, Peoples R China
[3] Fudan Univ, Inst Pathol, Shanghai 200433, Peoples R China
[4] Fudan Univ, Shanghai Canc Ctr, Inst Merieux Lab, Shanghai 200433, Peoples R China
[5] bioMerieux Shanghai Co Ltd, Shanghai, Peoples R China
来源
SCIENTIFIC REPORTS | 2015年 / 5卷
关键词
GENE-EXPRESSION; A-MYB; BURKITTS-LYMPHOMA; LIM PROTEIN; SURVIVAL; CHEMOTHERAPY; ACTIVATION; MICROARRAY; TISSUE; TUMOR;
D O I
10.1038/srep10006
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The division of diffuse large B-cell lymphoma (DLBCL) into germinal center B-cell-like (GCB) and activated B-cell-like (ABC) subtypes based on gene expression profiling has proved to be a landmark in understanding the pathogenesis of the disease. This study aims to identify a novel biomarker to facilitate the translation of research into clinical practice. Using a training set of 350 patients, we identified a two-gene expression signature, "LIMD1-MYBL1 Index", which is significantly associated with cell-of-origin subtypes and clinical outcome. This two-gene index was further validated in two additional dataset. Tested against the gold standard method, the LIMD1-MYBL1 Index achieved 81% sensitivity, 89% specificity for ABC group and 81% sensitivity, 87% specificity for GCB group. The ABC group had significantly worse overall survival than the GCB group (hazard ratio = 3.5, P = 0.01). Furthermore, the performance of LIMD1-MYBL1 Index was satisfactory compared with common immunohistochemical algorithms. Thus, the LIMD1-MYBL1 Index had considerable clinical value for DLBCL subtype classification and prognosis. Our results might prompt the further development of this two-gene index to a simple assay amenable to routine clinical practice.
引用
收藏
页数:7
相关论文
共 30 条
  • [1] Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    Alizadeh, AA
    Eisen, MB
    Davis, RE
    Ma, C
    Lossos, IS
    Rosenwald, A
    Boldrick, JG
    Sabet, H
    Tran, T
    Yu, X
    Powell, JI
    Yang, LM
    Marti, GE
    Moore, T
    Hudson, J
    Lu, LS
    Lewis, DB
    Tibshirani, R
    Sherlock, G
    Chan, WC
    Greiner, TC
    Weisenburger, DD
    Armitage, JO
    Warnke, R
    Levy, R
    Wilson, W
    Grever, MR
    Byrd, JC
    Botstein, D
    Brown, PO
    Staudt, LM
    [J]. NATURE, 2000, 403 (6769) : 503 - 511
  • [2] Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment
    Alizadeh, Ash A.
    Gentles, Andrew J.
    Alencar, Alvaro J.
    Liu, Chih Long
    Kohrt, Holbrook E.
    Houot, Roch
    Goldstein, Matthew J.
    Zhao, Shuchun
    Natkunam, Yasodha
    Advani, Ranjana H.
    Gascoyne, Randy D.
    Briones, Javier
    Tibshirani, Robert J.
    Myklebust, June H.
    Plevritis, Sylvia K.
    Lossos, Izidore S.
    Levy, Ronald
    [J]. BLOOD, 2011, 118 (05) : 1350 - 1358
  • [3] A-myb rescues murine B-cell lymphomas from IgM-receptor-mediated apoptosis through c-myc transcriptional regulation
    Arsura, M
    Hofmann, CS
    Golay, J
    Introna, M
    Sonenshein, GE
    [J]. BLOOD, 2000, 96 (03) : 1013 - 1020
  • [4] BARLETTA C, 1991, CANCER RES, V51, P3821
  • [5] Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome
    Barrans, Sharon L.
    Crouch, Simon
    Care, Matthew A.
    Worrillow, Lisa
    Smith, Alex
    Patmore, Russell
    Westhead, David R.
    Tooze, Reuben
    Roman, Eve
    Jack, Andrew S.
    [J]. BRITISH JOURNAL OF HAEMATOLOGY, 2012, 159 (04) : 441 - 453
  • [6] NCBI GEO: archive for functional genomics data sets-update
    Barrett, Tanya
    Wilhite, Stephen E.
    Ledoux, Pierre
    Evangelista, Carlos
    Kim, Irene F.
    Tomashevsky, Maxim
    Marshall, Kimberly A.
    Phillippy, Katherine H.
    Sherman, Patti M.
    Holko, Michelle
    Yefanov, Andrey
    Lee, Hyeseung
    Zhang, Naigong
    Robertson, Cynthia L.
    Serova, Nadezhda
    Davis, Sean
    Soboleva, Alexandra
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) : D991 - D995
  • [7] Long-term outcome of patients in the LNH-98.5 trial, the first randomized study comparing rituximab-CHOP to standard CHOP chemotherapy in DLBCL patients: a study by the Groupe d'Etudes des Lymphomes de l'Adulte
    Coiffier, Bertrand
    Thieblemont, Catherine
    Van Den Neste, Eric
    Lepeu, Gerard
    Plantier, Isabelle
    Castaigne, Sylvie
    Lefort, Sophie
    Marit, Gerald
    Macro, Margaret
    Sebban, Catherine
    Belhadj, Karim
    Bordessoule, Dominique
    Ferme, Christophe
    Tilly, Herve
    [J]. BLOOD, 2010, 116 (12) : 2040 - 2045
  • [8] Immunohistochemical prognostic markers in diffuse large B-cell lymphoma: Validation of tissue microarray as a prerequisite for broad clinical applications - A study from the Lunenburg Lymphoma Biomarker Consortium
    de Jong, Daphne
    Rosenwald, Andreas
    Chhanabhai, Mukesh
    Gaulard, Philippe
    Klapper, Wolfram
    Lee, Abigail
    Sander, Birgitta
    Thorns, Christoph
    Campo, Elias
    Molina, Thierry
    Norton, Andrew
    Hagenbeek, Anton
    Horning, Sandra
    Lister, Andrew
    Raemaekers, John
    Gascoyne, Randy D.
    Salles, Gilles
    Weller, Edie
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2007, 25 (07) : 805 - 812
  • [9] The LIM protein Ajuba influences interleukin-1-induced NF-κB activation by affecting the assembly and activity of the protein kinase Cζ/p62/TRAF6 signaling complex
    Feng, YF
    Longmore, GD
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2005, 25 (10) : 4010 - 4022
  • [10] The LIM protein, LIMD1, regulates AP-1 activation through an interaction with TRAF6 to influence osteoclast development
    Feng, Yunfeng
    Zhao, Haibo
    Luderer, Hilary F.
    Epple, Holly
    Faccio, Roberta
    Ross, F. Patrick
    Teitelbaum, Steven L.
    Longmore, Gregory D.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (01) : 39 - 48