The orchard plot: Cultivating a forest plot for use in ecology, evolution, and beyond

被引:153
作者
Nakagawa, Shinichi [1 ]
Lagisz, Malgorzata [1 ]
O'Dea, Rose E. [1 ]
Rutkowska, Joanna [2 ]
Yang, Yefeng [1 ]
Noble, Daniel W. A. [3 ]
Senior, Alistair M. [4 ]
机构
[1] Univ New South Wales, Sch Biol Earth & Environm Sci, Evolut & Ecol Res Ctr, Sydney, NSW, Australia
[2] Jagiellonian Univ, Fac Biol, Inst Environm Sci, Krakow, Poland
[3] Australian Natl Univ, Res Sch Biol, Div Ecol & Evolut, Canberra, ACT, Australia
[4] Univ Sydney, Charles Perkins Ctr, Sch Life & Environm Sci, Camperdown, NSW, Australia
基金
澳大利亚研究理事会;
关键词
caterpillar plot; credibility interval; credible interval; evidence synthesis; graphical tool; meta-regression; summary forest plot; METAANALYSIS; HETEROGENEITY; MAGNITUDE;
D O I
10.1002/jrsm.1424
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
"Classic" forest plots show the effect sizes from individual studies and the aggregate effect from a meta-analysis. However, in ecology and evolution, meta-analyses routinely contain over 100 effect sizes, making the classic forest plot of limited use. We surveyed 102 meta-analyses in ecology and evolution, finding that only 11% use the classic forest plot. Instead, most used a "forest-like plot," showing point estimates (with 95% confidence intervals [CIs]) from a series of subgroups or categories in a meta-regression. We propose a modification of the forest-like plot, which we name the "orchard plot." Orchard plots, in addition to showing overall mean effects and CIs from meta-analyses/regressions, also include 95% prediction intervals (PIs), and the individual effect sizes scaled by their precision. The PI allows the user and reader to see the range in which an effect size from a future study may be expected to fall. The PI, therefore, provides an intuitive interpretation of any heterogeneity in the data. Supplementing the PI, the inclusion of underlying effect sizes also allows the user to see any influential or outlying effect sizes. We showcase the orchard plot with example datasets from ecology and evolution, using the R package,orchard, including several functions for visualizing meta-analytic data using forest-plot derivatives. We consider the orchard plot as a variant on the classic forest plot, cultivated to the needs of meta-analysts in ecology and evolution. Hopefully, the orchard plot will prove fruitful for visualizing large collections of heterogeneous effect sizes regardless of the field of study.
引用
收藏
页码:4 / 12
页数:9
相关论文
共 41 条
[1]  
[Anonymous], 2012, beeswarm: the bee swarm plot, an alternative to stripchart
[2]  
[Anonymous], 2017, BIOL LE
[3]   Graphical displays for meta-analysis: An overview with suggestions for practice [J].
Anzures-Cabrera, Judith ;
Higgins, Julian P. T. .
RESEARCH SYNTHESIS METHODS, 2010, 1 (01) :66-80
[4]   Raindrop plots: A new way to display collections of likelihoods and distributions [J].
Barrowman, NJ ;
Myers, RA .
AMERICAN STATISTICIAN, 2003, 57 (04) :268-274
[5]   Basics of meta-analysis: I2 is not an absolute measure of heterogeneity [J].
Borenstein, Michael ;
Higgins, Julian P. T. ;
Hedges, Larry V. ;
Rothstein, Hannah R. .
RESEARCH SYNTHESIS METHODS, 2017, 8 (01) :5-18
[6]  
Borman G., 2009, The Handbook of Research Synthesis and Meta-Analysis, P497
[7]  
Clarke E, 2017, ggbeeswarm: categorical scatter (violin point) plots. R package version 0.6.0
[8]   Livestock grazing alters multiple ecosystem properties and services in salt marshes: a meta-analysis [J].
Davidson, Kate E. ;
Fowler, Mike S. ;
Skov, Martin W. ;
Doerr, Stefan H. ;
Beaumont, Nicola ;
Griffin, John N. .
JOURNAL OF APPLIED ECOLOGY, 2017, 54 (05) :1395-1405
[9]   Experimental climate change weakens the insurance effect of biodiversity [J].
Eklof, Johan S. ;
Alsterberg, Christian ;
Havenhand, Jonathan N. ;
Sundback, Kristina ;
Wood, Hannah L. ;
Gamfeldt, Lars .
ECOLOGY LETTERS, 2012, 15 (08) :864-872
[10]   Does early-life diet affect longevity? A meta-analysis across experimental studies [J].
English, Sinead ;
Uller, Tobias .
BIOLOGY LETTERS, 2016, 12 (09)