Whole mitochondrial genome analysis of Tai-Kadai-speaking populations in Southwest China

被引：7
作者：
Feng, Yuhang [1 ]
Zhang, Hongling [1 ]
Wang, Qiyan [1 ]
Jin, Xiaoye [1 ]
Le, Cuiyun [1 ]
Liu, Yubo [1 ]
Wang, Xiaoxue [1 ]
Jiang, Huang [1 ]
Ren, Zheng [1 ]
机构：
[1] Guizhou Med Univ, Dept Forens Med, Guiyang, Guizhou, Peoples R China
来源：
FRONTIERS IN ECOLOGY AND EVOLUTION | 2022年 / 10卷
关键词：
mitogenome; Guizhou Tai-Kadai; genetic diversity; maternal heredity; haplogroup; DNA; GENETICS; SEQUENCE; MUTATIONS; DIVERSITY; SHUI;
D O I：
10.3389/fevo.2022.1000493
中图分类号：
Q14 [生态学（生物生态学）];
学科分类号：
071012 ; 0713 ;
摘要：
As a single matrilineal gene, human mitochondrial DNA plays a very important role in the study of population genetics. The whole mitogenome sequences of 287 individuals of the Tai-Kadai-speaking population in Guizhou were obtained. It was discovered that there were 82, 104, and 94 haplotypes in 83 Bouyei individuals, 107 Dong individuals, and 97 Sui individuals, respectively; and the haplotype diversity in Bouyei, Dong, and Sui groups was 1.000 +/- 0.02, 0.9993 +/- 0.0015, and 0.999 +/- 0.002, respectively. The result of neutrality tests of the Tai-Kadai-speaking population in Guizhou showed significant negative values, and the analysis of mismatch distribution showed an obvious unimodal distribution. The results implied that Guizhou Tai-Kadai-speaking populations had high genetic diversities and may have experienced recent population expansion. In addition, the primary haplogroups of studied populations were M*, F, B, D, and R*, implying that they may origin from Southern China. The matrilineal genetic structure of the Tai-Kadai-speaking populations in Guizhou was analyzed by merging the mitogenome data of 79 worldwide populations as reference data. The results showed that there were close relationships between studied populations and other Tai-Kadai as well as some Austronesian populations in East and Southeast Asia. Overall, the mitogenome data generated in this study will provide important data for the study of genetic structure of Tai-Kadai speaking populations.
引用
收藏
页数：17
相关论文
共 58 条
[31]   Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages [J].
Kutanan, Wibhu ;
Kampuansai, Jatupol ;
Srikummool, Metawee ;
Kangwanpong, Daoroong ;
Ghirotto, Silvia ;
Brunelli, Andrea ;
Stoneking, Mark .
HUMAN GENETICS, 2017, 136 (01) :85-98
[32]   The mitochondrial DNA control region sequences from the Chinese Miao population of southeastern China [J].
Le, Cuiyun ;
Ren, Zheng ;
Zhang, Hongling ;
Wang, Qiyan ;
Yang, Meiqing ;
Liu, Yubo ;
Huang, Jiang ;
Wang, Jie .
ANNALS OF HUMAN BIOLOGY, 2019, 46 (7-8) :606-609
[33]   POPART: full-feature software for haplotype network construction [J].
Leigh, Jessica W. ;
Bryant, David .
METHODS IN ECOLOGY AND EVOLUTION, 2015, 6 (09) :1110-1116
[34]  
Li H, 2009, BIOINFORMATICS, V25, P1754, DOI [10.1093/bioinformatics/btp324, 10.1093/bioinformatics/btp698, 10.1093/bioinformatics/btp352]
[35]   Mitochondrial DNA diversity and population differentiation in Southern East Asia [J].
Li, Hui ;
Cai, Xiaoyun ;
Winograd-Cort, Elizabeth R. ;
Wen, Bo ;
Cheng, Xu ;
Qin, Zhendong ;
Liu, Wenhong ;
Liu, Yangfan ;
Pan, Shangling ;
Qian, Ji ;
Tan, Chia-Chen ;
Jin, Li .
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 2007, 134 (04) :481-488
[36]   River Valleys Shaped the Maternal Genetic Landscape of Han Chinese [J].
Li, Yu-Chun ;
Ye, Wei-Jian ;
Jiang, Chuan-Gui ;
Zeng, Zhen ;
Tian, Jiao-Yang ;
Yang, Li-Qin ;
Liu, Kai-Jun ;
Kong, Qing-Peng .
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 36 (08) :1643-1652
[37]  
Lippold Sebastian, 2014, Investig Genet, V5, P13, DOI 10.1186/2041-2223-5-13
[38]   Massive parallel sequencing of mitochondrial DNA genomes from mother-child pairs using the ion torrent personal genome machine (PGM) [J].
Ma, Ke ;
Zhao, Xueying ;
Li, Hui ;
Cao, Yu ;
Li, Wei ;
Ouyang, Jian ;
Xie, Lu ;
Liu, Wenbin .
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2018, 32 :88-93
[39]   Making mitochondrial DNA is inflammatory [J].
Murphy, Michael P. .
NATURE, 2018, 560 (7717) :176-177
[40]   Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia [J].
Nguyen Thuy Duong ;
Macholdt, Enrico ;
Nguyen Dang Ton ;
Arias, Leonardo ;
Schroder, Roland ;
Nguyen Van Phong ;
Vo Thi Bich Thuy ;
Nguyen Hai Ha ;
Huynh Thi Thu Hue ;
Nguyen Thi Xuan ;
Kim Thi Phuong Oanh ;
Le Thi Thu Hien ;
Nguyen Huy Hoang ;
Pakendorf, Brigitte ;
Stoneking, Mark ;
Nong Van Hai .
SCIENTIFIC REPORTS, 2018, 8
123456