Whole mitochondrial genome analysis of Tai-Kadai-speaking populations in Southwest China

被引:7
作者
Feng, Yuhang [1 ]
Zhang, Hongling [1 ]
Wang, Qiyan [1 ]
Jin, Xiaoye [1 ]
Le, Cuiyun [1 ]
Liu, Yubo [1 ]
Wang, Xiaoxue [1 ]
Jiang, Huang [1 ]
Ren, Zheng [1 ]
机构
[1] Guizhou Med Univ, Dept Forens Med, Guiyang, Guizhou, Peoples R China
关键词
mitogenome; Guizhou Tai-Kadai; genetic diversity; maternal heredity; haplogroup; DNA; GENETICS; SEQUENCE; MUTATIONS; DIVERSITY; SHUI;
D O I
10.3389/fevo.2022.1000493
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
As a single matrilineal gene, human mitochondrial DNA plays a very important role in the study of population genetics. The whole mitogenome sequences of 287 individuals of the Tai-Kadai-speaking population in Guizhou were obtained. It was discovered that there were 82, 104, and 94 haplotypes in 83 Bouyei individuals, 107 Dong individuals, and 97 Sui individuals, respectively; and the haplotype diversity in Bouyei, Dong, and Sui groups was 1.000 +/- 0.02, 0.9993 +/- 0.0015, and 0.999 +/- 0.002, respectively. The result of neutrality tests of the Tai-Kadai-speaking population in Guizhou showed significant negative values, and the analysis of mismatch distribution showed an obvious unimodal distribution. The results implied that Guizhou Tai-Kadai-speaking populations had high genetic diversities and may have experienced recent population expansion. In addition, the primary haplogroups of studied populations were M*, F, B, D, and R*, implying that they may origin from Southern China. The matrilineal genetic structure of the Tai-Kadai-speaking populations in Guizhou was analyzed by merging the mitogenome data of 79 worldwide populations as reference data. The results showed that there were close relationships between studied populations and other Tai-Kadai as well as some Austronesian populations in East and Southeast Asia. Overall, the mitogenome data generated in this study will provide important data for the study of genetic structure of Tai-Kadai speaking populations.
引用
收藏
页数:17
相关论文
共 58 条
[1]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[2]   Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA [J].
Andrews, RM ;
Kubacka, I ;
Chinnery, PF ;
Lightowlers, RN ;
Turnbull, DM ;
Howell, N .
NATURE GENETICS, 1999, 23 (02) :147-147
[3]   World Medical Association Declaration of Helsinki Ethical Principles for Medical Research Involving Human Subjects [J].
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2013, 310 (20) :2191-2194
[4]   Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics [J].
Bandelt, Hans-Juergen ;
van Oven, Mannis ;
Salas, Antonio .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2012, 126 (06) :901-916
[5]   Median-joining networks for inferring intraspecific phylogenies [J].
Bandelt, HJ ;
Forster, P ;
Röhl, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) :37-48
[6]   The dawn of human matrilineal diversity [J].
Behar, Doron M. ;
Villems, Richard ;
Soodyall, Himla ;
Blue-Smith, Jason ;
Pereira, Luisa ;
Metspalu, Ene ;
Scozzari, Rosaria ;
Makkan, Heeran ;
Tzur, Shay ;
Comas, David ;
Bertranpetit, Jaume ;
Quintana-Murci, Lluis ;
Tyler-Smith, Chris ;
Wells, R. Spencer ;
Rosset, Saharon .
AMERICAN JOURNAL OF HUMAN GENETICS, 2008, 82 (05) :1130-1140
[7]   Principal-Component Analysis for Assessment of Population Stratification in Mitochondrial Medical Genetics [J].
Biffi, Alessandro ;
Anderson, Christopher D. ;
Nalls, Michael A. ;
Rahman, Rosanna ;
Sonni, Akshata ;
Cortellini, Lynelle ;
Rost, Natalia S. ;
Matarin, Mar ;
Hernandez, Dena G. ;
Plourde, Anna ;
de Bakker, Paul I. W. ;
Ross, Owen A. ;
Greenberg, Steven M. ;
Furie, Karen L. ;
Meschia, James F. ;
Singleton, Andrew B. ;
Saxena, Richa ;
Rosand, Jonathan .
AMERICAN JOURNAL OF HUMAN GENETICS, 2010, 86 (06) :904-917
[8]   Quantifying the legacy of the Chinese Neolithic on the maternal genetic heritage of Taiwan and Island Southeast Asia [J].
Brandao, Andreia ;
Eng, Ken Khong ;
Rito, Teresa ;
Cavadas, Bruno ;
Bulbeck, David ;
Gandini, Francesca ;
Pala, Maria ;
Mormina, Maru ;
Hudson, Bob ;
White, Joyce ;
Ko, Tsang-Ming ;
Saidin, Mokhtar ;
Zafarina, Zainuddin ;
Oppenheimer, Stephen ;
Richards, Martin B. ;
Pereira, Luisa ;
Soares, Pedro .
HUMAN GENETICS, 2016, 135 (04) :363-376
[9]   Mitochondrial DNA mutations in human cancer [J].
Chatterjee, A. ;
Mambo, E. ;
Sidransky, D. .
ONCOGENE, 2006, 25 (34) :4663-4674
[10]   Genetic diversities and phylogenetic analyses of three Chinese main ethnic groups in southwest China: A Y-Chromosomal STR study [J].
Chen, Pengyu ;
He, Guanglin ;
Zou, Xing ;
Zhang, Xin ;
Li, Jida ;
Wang, Zhisong ;
Gao, Hongyan ;
Luo, Li ;
Zhang, Zhongqing ;
Yu, Jian ;
Han, Yanyan .
SCIENTIFIC REPORTS, 2018, 8