Exome sequencing and the genetics of intellectual disability

被引:54
作者
Topper, S. [1 ]
Ober, C. [1 ]
Das, S. [1 ]
机构
[1] Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
关键词
cognitive impairment; diagnostics; exome; exome sequencing; intellectual disability; mental retardation; next-generation sequencing; rare disease; DE-NOVO MUTATIONS; LINKED MENTAL-RETARDATION; DEVELOPMENTAL DELAY; CENTROSOMAL PROTEIN; MLL2; REVEALS; CAPTURE; FAMILY; DEFECT; GENES;
D O I
10.1111/j.1399-0004.2011.01720.x
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Exome sequencing has greatly impacted the speed at which new disease genes are identified. In the last year alone, six studies have used exome sequencing to identify new genes involved in intellectual disability, a genetically heterogeneous condition affecting 1-3% of the population. These studies encompass the full gamut of modes of inheritance and phenotypic presentation, including syndromic and non-syndromic conditions, sporadic and familial cases, and dominant and recessive inheritance patterns. Because different disease presentations require different approaches to gene discovery, studies of intellectual disability provide a nearly comprehensive showcase of strategies for exome-driven gene discovery. Despite these successes, the etiology of similar to 60% of cases of intellectual disability remains unknown. The application of exome sequencing to the clinical diagnosis of intellectual disability in the near future will ultimately reduce the number of idiopathic cases and provide a rich source of sequence variation for the identification of new intellectual disability genes.
引用
收藏
页码:117 / 126
页数:10
相关论文
共 66 条
[1]   Kabuki syndrome: a review [J].
Adam, MP ;
Hudgins, L .
CLINICAL GENETICS, 2005, 67 (03) :209-219
[2]   Dindel: Accurate indel calls from short-read data [J].
Albers, Cornelis A. ;
Lunter, Gerton ;
MacArthur, Daniel G. ;
McVean, Gilean ;
Ouwehand, Willem H. ;
Durbin, Richard .
GENOME RESEARCH, 2011, 21 (06) :961-973
[3]  
Alkuraya FowzanS., 2011, Am J Hum Genet
[4]  
[Anonymous], MMWR MORB MORTAL WKL
[5]  
[Anonymous], INT DIS
[6]  
[Anonymous], MMWR MORB MORTAL WKL
[7]   The CC2D1A, a member of a new gene family with C2 domains, is involved in autosomal recessive non-syndromic mental retardation [J].
Basel-Vanagaite, L ;
Attia, R ;
Yahav, M ;
Ferland, RJ ;
Anteki, L ;
Walsh, CA ;
Olender, T ;
Straussberg, R ;
Magal, N ;
Taub, E ;
Drasinover, V ;
Alkelai, A ;
Bercovich, D ;
Rechavi, G ;
Simon, AJ ;
Shohat, M .
JOURNAL OF MEDICAL GENETICS, 2006, 43 (03) :203-210
[8]   A centrosomal mechanism involving CDK5RAP2 and CENPJ controls brain size [J].
Bond, J ;
Roberts, E ;
Springell, K ;
Lizarraga, S ;
Scott, S ;
Higgins, J ;
Hampshire, DJ ;
Morrison, EE ;
Leal, GF ;
Silva, EO ;
Costa, SMR ;
Baralle, D ;
Raponi, M ;
Karbani, G ;
Rashid, Y ;
Jafri, H ;
Bennett, C ;
Corry, P ;
Walsh, CA ;
Woods, CG .
NATURE GENETICS, 2005, 37 (04) :353-355
[9]   ASPM is a major determinant of cerebral cortical size [J].
Bond, J ;
Roberts, E ;
Mochida, GH ;
Hampshire, DJ ;
Scott, S ;
Askham, JM ;
Springell, K ;
Mahadevan, M ;
Crow, YJ ;
Markham, AF ;
Walsh, CA ;
Woods, CG .
NATURE GENETICS, 2002, 32 (02) :316-320
[10]   Delineation of a critical region on chromosome 18 for the del(18)(q12.2q21.1) syndrome [J].
Buysse, Karen ;
Menten, Bjoern ;
Oostra, Ann ;
Tavernier, Sylvie ;
Mortier, Geert R. ;
Speleman, Frank .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2008, 146A (10) :1330-1334