Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016

被引：62

作者：

Chiu, Charles Y. ^{[1
,2
]}

Coffey, Lark L. ^{[3
]}

Murkey, Jamie ^{[4
]}

Symmes, Kelly ^{[3
]}

Sample, Hannah A. ^{[1
]}

Wilson, Michael R. ^{[1
]}

Naccache, Samia N. ^{[5
]}

Arevalo, Shaun ^{[1
,2
]}

Somasekar, Sneha ^{[1
,2
]}

Federman, Scot ^{[4
]}

Stryke, Doug ^{[4
]}

Vespa, Paul ^{[4
]}

Schiller, Gary ^{[4
]}

Messenger, Sharon ^{[6
]}

Humphries, Romney ^{[4
]}

Miller, Steve ^{[1
,2
]}

Klausner, Jeffrey D. ^{[4
]}

机构：

[1] Univ Calif San Francisco, San Francisco, CA 94143 USA

[2] Univ Calif San Francisco, Abbott Viral Diagnost & Discovery Ctr, San Francisco, CA 94143 USA

[3] Univ Calif Davis, Davis, CA 95616 USA

[4] Univ Calif Los Angeles, Los Angeles, CA USA

[5] Univ Southern Calif, Los Angeles, CA USA

[6] Calif Dept Publ Hlth, Richmond, CA USA

来源：

EMERGING INFECTIOUS DISEASES | 2017年 / 23卷 / 10期

关键词：

D O I：

10.3201/eid2310.161986

中图分类号：

R392 [医学免疫学]; Q939.91 [免疫学];

学科分类号：

100102 ;

摘要：

We used unbiased metagenomic next-generation sequencing to diagnose a fatal case of meningoencephalitis caused by St. Louis encephalitis virus in a patient from California in September 2016. This case is associated with the recent 2015-2016 reemergence of this virus in the southwestern United States.

引用

收藏

页码：1694 / 1698

页数：5

相关论文

共 14 条

[1]

CDC, SAINT LOU ENC

[2] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[3] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[4]

Mongkolrattanothai K, 2017, J PEDIAT INFECT DIS

[5] A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples [J].

Naccache, Samia N. ;

Federman, Scot ;

Veeraraghavan, Narayanan ;

Zaharia, Matei ;

Lee, Deanna ;

Samayoa, Erik ;

Bouquet, Jerome ;

Greninger, Alexander L. ;

Luk, Ka-Cheung ;

Enge, Barryett ;

Wadford, Debra A. ;

Messenger, Sharon L. ;

Genrich, Gillian L. ;

Pellegrino, Kristen ;

Grard, Gilda ;

Leroy, Eric ;

Schneider, Bradley S. ;

Fair, Joseph N. ;

Martinez, Miguel A. ;

Isa, Pavel ;

Crump, John A. ;

DeRisi, Joseph L. ;

Sittler, Taylor ;

Hackett, John, Jr. ;

Miller, Steve ;

Chiu, Charles Y. .

GENOME RESEARCH, 2014, 24 (07) :1180-1192

[6] Effect of interferon-α2b therapy on St. Louis viral meningoencephalitis:: Clinical and laboratory results of a pilot study [J].

Rahal, JJ ;

Anderson, J ;

Rosenberg, C ;

Reagan, T ;

Thompson, LL .

JOURNAL OF INFECTIOUS DISEASES, 2004, 190 (06) :1084-1087

[7]

Reisen WK, 2008, J MED ENTOMOL, V45, P494, DOI 10.1603/0022-2585(2008)45[494:PWNVTA]2.0.CO

[8]

2

[9] Encephalitic Arboviruses: Emergence, Clinical Presentation, and Neuropathogenesis [J].

Salimi, Hamid ;

Cain, Matthew D. ;

Klein, Robyn S. .

NEUROTHERAPEUTICS, 2016, 13 (03) :514-534

[10] Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection [J].

Schlaberg, Robert ;

Chiu, Charles Y. ;

Miller, Steve ;

Procop, Gary W. ;

Weinstock, George .

ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2017, 141 (06) :776-786