Trade-offs between accuracy and interpretability in von Bertalanffy random-effects models of growth

被引:16
|
作者
Vincenzi, Simone [1 ,2 ]
Crivelli, Alain J. [3 ]
Munch, Stephan [4 ]
Skaug, Hans J. [5 ]
Mangel, Marc [1 ,6 ]
机构
[1] Univ Calif Santa Cruz, Dept Appl Math & Stat, Ctr Stock Assessment Res, Santa Cruz, CA 95064 USA
[2] Politecn Milan, Dipartimento Elettron Informaz & Bioingn, Via Ponzio 34-5, I-20133 Milan, Italy
[3] Stn Biol Tour du Valat, F-1320 Le Sambuc, France
[4] NOAA, Fisheries Ecol Div, Southwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, 110 Shaffer Rd, Santa Cruz, CA 95060 USA
[5] Univ Bergen, Dept Math, Box 7800, N-5020 Bergen, Norway
[6] Univ Bergen, Dept Biol, N-5020 Bergen, Norway
关键词
brown trout (Salmo trutta); longitudinal data; rumble trout (Salmo via atus); model predictions; von Bertalanffy growth fnnction; Slovenia; ECO-EVOLUTIONARY DYNAMICS; TROUT SALMO-MARMORATUS; INDIVIDUAL GROWTH; FISH; PARAMETERS; CONSEQUENCES; VARIABILITY; LIKELIHOOD; DEMOGRAPHY; MORTALITY;
D O I
10.1890/15-1177
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Better understanding of variation in growth will always be an important problem in ecology. Individual variation in growth can arise from a variety of processes; for example, individuals within a population vary in their intrinsic metabolic rates and behavioral traits, which may influence their foraging dynamics and access to resources. However, when adopting a growth model, we face trade-offs between model complexity, biological interpretability of parameters, and goodness of fit. We explore how different formulations of the von Bertalanffy growth function (vBGF) with individual random effects and environmental predictors affect these trade-offs. In the vBGF, the growth of an organism results from a dynamic balance between anabolic and catabolic processes. We start from a formulation of the vBGF that models the anabolic coefficient (q) as a function of the catabolic coefficient (k), a coefficient related to the properties of the environment (y) and a parameter that determines the relative importance of behavior and environment in determining growth (w). We treat the vBGF parameters as a function of individual random effects and environmental variables. We use simulations to show how different functional forms and individual or group variability in the growth function's parameters provide a very flexible description of growth trajectories. We then consider a case study of two fish populations of Salina marrnoratus and Salnto trutta to test the goodness of fit and predictive power of the models, along with the biological interpretability of vBGF's parameters when using different model formulations. The best models, according to AIC, included individual variability in both k and 7 and cohort as predictor of growth trajectories, and are consistent with the hypothesis that habitat selection is more important than behavioral and metabolic traits in determining lifetime growth trajectories of the two fish species. Model predictions of individual growth trajectories were largely more accurate than predictions based on mean size-at-age of fish. Our method shares information across individuals, and thus, for both fish populations investigated, allows using a single measurement early in the life of individual fish or cohort to obtain accurate predictions of lifetime individual or cohort size-at-age.
引用
收藏
页码:1535 / 1552
页数:18
相关论文
共 13 条
  • [1] Admitting ageing error when fitting growth curves: an example using the von Bertalanffy growth function with random effects
    Cope, Jason M.
    Punt, Andre E.
    CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2007, 64 (02) : 205 - 218
  • [2] Trade-offs between growth and mortality and the maintenance of individual variation in growth
    Mangel, M
    Stamps, J
    EVOLUTIONARY ECOLOGY RESEARCH, 2001, 3 (05) : 583 - 593
  • [3] Trade-Offs Between Growth Rate and Other Fungal Traits
    Lovero, Karissa G.
    Treseder, Kathleen K.
    FRONTIERS IN FORESTS AND GLOBAL CHANGE, 2021, 4
  • [4] Trade-offs between growth and reproduction in wild Atlantic cod
    Folkvord, Arild
    Jorgensen, Christian
    Korsbrekke, Knut
    Nash, Richard D. M.
    Nilsen, Trygve
    Skjaeraasen, Jon Egil
    CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2014, 71 (07) : 1106 - 1112
  • [5] Optimal sampling and signal detection: unifying models of attention and speed-accuracy trade-offs
    Abbott, Kevin R.
    Sherratt, Thomas N.
    BEHAVIORAL ECOLOGY, 2013, 24 (03) : 605 - 616
  • [6] Trade-offs between growth and survival: Responses of freshwater snails to predacious crayfish
    Lewis, DB
    ECOLOGY, 2001, 82 (03) : 758 - 765
  • [7] Genetic trends and trade-offs between growth and reproductive traits in a Nellore herd
    Alves Abreu, Luiza Rodrigues
    Pereira Ribeiro, Virginia Mara
    Gouveia, Gabriela Canabrava
    Cardoso, Eduardo Penteado
    Buranelo Toral, Fabio Luiz
    PLOS ONE, 2018, 13 (08):
  • [8] Weather and trade-offs between growth and reproduction regulate fruit production in European forests
    Vergotti, M. J.
    Fernandez-Martinez, M.
    Kefauver, S. C.
    Janssens, I. A.
    Penuelas, J.
    AGRICULTURAL AND FOREST METEOROLOGY, 2019, 279
  • [9] Trade-offs between data resolution, accuracy, and cost when choosing information to plan reserves for coral reef ecosystems
    Tulloch, Vivitskaia J.
    Klein, Carissa J.
    Jupiter, Stacy D.
    Tulloch, Ayesha I. T.
    Roelfsema, Chris
    Possingham, Hugh P.
    JOURNAL OF ENVIRONMENTAL MANAGEMENT, 2017, 188 : 108 - 119
  • [10] Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
    Bigler, Christof
    PLOS ONE, 2016, 11 (03):