Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

被引：17

作者：

Copeland, Alex ^{[2
]}

Zhang, Xiaojing ^{[2
,3
]}

Misra, Monica ^{[2
,3
]}

Lapidus, Alla ^{[2
]}

Nolan, Matt ^{[2
]}

Lucas, Susan ^{[2
]}

Deshpande, Shweta ^{[2
]}

Cheng, Jan-Fang ^{[2
]}

Tapia, Roxanne ^{[2
,3
]}

Goodwin, Lynne A. ^{[2
,3
]}

Pitluck, Sam ^{[2
]}

Liolios, Konstantinos ^{[2
]}

Pagani, Ioanna ^{[2
]}

Ivanova, Natalia ^{[2
]}

Mikhailova, Natalia ^{[2
]}

Pati, Amrita ^{[2
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[2
,5
]}

Hauser, Loren ^{[2
,5
]}

Pan, Chongle ^{[2
,5
]}

Jeffries, Cynthia D. ^{[2
,5
]}

Detter, John C. ^{[2
]}

Brambilla, Evelyne-Marie ^{[1
]}

Rohde, Manfred ^{[6
]}

Djao, Olivier D. Ngatchou ^{[6
]}

Goeker, Markus ^{[1
]}

Sikorski, Johannes ^{[1
]}

Tindall, Brian J. ^{[1
]}

Woyke, Tanja ^{[2
]}

Bristow, James ^{[2
]}

Eisen, Jonathan A. ^{[2
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[2
,8
]}

Kyrpides, Nikos C. ^{[2
]}

Klenk, Hans-Peter ^{[1
]}

Mavromatis, Konstantinos ^{[2
]}

机构：

[1] Leibniz Inst DSMZ German Collect Microorganisms &, Braunschweig, Germany

[2] DOE Joint Genome Inst, Walnut Creek, CA USA

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

[8] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogen, Brisbane, Qld, Australia

来源：

STANDARDS IN GENOMIC SCIENCES | 2012年 / 6卷 / 02期

关键词：

strictly aerobic; non-motile; Gram-negative; psychrotolerant; chemoorganotrophic; Cytophagaceae; Cytophagia; GEBA; GRAM-NEGATIVE BACTERIUM; SP-NOV; ALGORITHM; DATABASE; ARCHAEA; SYSTEM;

D O I：

10.4056/sigs.2475579

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Runella slithyformis Larkin and Williams 1978 is the type species of the genus Runella, which belongs to the Cytophagaceae, a family that was only recently classified to the order Cytophagales in the class Cytophagia. The species is of interest because it is able to grow at temperatures as low as 4 degrees C. This is the first completed genome sequence of a member of the genus Runella and the sixth sequence from the family Cytophagaceae. The 6,919,729 bp long genome consists of a 6.6 Mbp circular genome and five circular plasmids of 38.8 to 107.0 kbp length, harboring a total of 5,974 protein-coding and 51 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：145 / 154

页数：10

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