Bayesian Approach for Peak Detection in Two-Dimensional Chromatography

被引:37
作者
Vivo-Truyols, Gabriel [1 ]
机构
[1] Univ Amsterdam, Analyt Chem Grp, vant Hoff Inst Mol Sci, NL-1098 XH Amsterdam, Netherlands
关键词
LIQUID-CHROMATOGRAPHY; GAS-CHROMATOGRAPHY; ALGORITHM;
D O I
10.1021/ac202124t
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A new method for peak detection in two-dimensional chromatography is presented. In a first step, the method starts with a conventional one-dimensional peak detection algorithm to detect constructed to decide which of the individual one-dimensional peaks modulated peaks. In a second step, a sophisticated algorithm is have been originated from the same compound and should then be arranged in a two-dimensional peak. The merging algorithm is based on Bayesian inference. The user sets prior information about certain parameters (e.g., second-dimension retention time variability, first-dimension band broadening, chromatographic noise). On the basis of these priors, the algorithm calculates the probability of myriads of peak arrangements (i.e., ways of merging one-dimensional peaks), finding which of them holds the highest value. Uncertainty in each parameter can be accounted by adapting conveniently its probability distribution function, which in turn may change the final decision of the most probable peak arrangement. It has been demonstrated that the Bayesian approach presented in this paper follows the chromatographers' intuition. The algorithm has been applied and tested with LC x LC and GC x GC data and takes around 1 min to process chromatograms with several thousands of peaks.
引用
收藏
页码:2622 / 2630
页数:9
相关论文
共 15 条
[1]   An introduction to Bayesian methods for analyzing chemistry data Part 1: An introduction to Bayesian theory and methods [J].
Armstrong, N. ;
Hibbert, D. B. .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2009, 97 (02) :194-210
[2]   Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry [J].
Cappadona, Salvatore ;
Levander, Fredrik ;
Jansson, Maria ;
James, Peter ;
Cerutti, Sergio ;
Pattini, Linda .
ANALYTICAL CHEMISTRY, 2008, 80 (13) :4960-4968
[3]   Matched filtering with background suppression for improved quality of base peak chromatograms and mass spectra in liquid chromatography-mass spectrometry [J].
Danielsson, R ;
Bylund, D ;
Markides, KE .
ANALYTICA CHIMICA ACTA, 2002, 454 (02) :167-184
[4]   Start-to-end processing of two-dimensional gel electrophoretic images [J].
Daszykowski, M. ;
Stanimirova, I. ;
Bodzon-Kulakowska, A. ;
Silberring, J. ;
Lubec, G. ;
Walczak, B. .
JOURNAL OF CHROMATOGRAPHY A, 2007, 1158 (1-2) :306-317
[5]  
Felinger A, 1998, DATA ANAL SIGNAL PRO
[6]  
Massart D.L., 1997, HDB CHEMOMETRICS Q A
[7]   TOPOGRAPHIC DISTANCE AND WATERSHED LINES [J].
MEYER, F .
SIGNAL PROCESSING, 1994, 38 (01) :113-125
[8]   Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet [J].
Nguyen, Nha ;
Huang, Heng ;
Oraintara, Soontorn ;
Vo, An .
BIOINFORMATICS, 2010, 26 (18) :i659-i665
[9]   Development of an algorithm for peak detection in comprehensive two-dimensional chromatography [J].
Peters, Sonja ;
Vivo-Truyols, Gabriel ;
Marriott, Philip J. ;
Schoenmakers, Peter J. .
JOURNAL OF CHROMATOGRAPHY A, 2007, 1156 (1-2) :14-24
[10]   Computer language for identifying chemicals with comprehensive two-dimensional gas chromatography and mass spectrometry [J].
Reichenbach, SE ;
Kottapalli, V ;
Ni, MT ;
Visvanathan, A .
JOURNAL OF CHROMATOGRAPHY A, 2005, 1071 (1-2) :263-269