Computational investigation, effects of polar and non-polar solvents on optimized structure with topological parameters (ELF, LOL, AIM, and RDG) of three glycine derivative compounds

被引:12
作者
Manickavelu, Thirunavukkarasu [1 ,2 ,3 ]
Govindrajan, Balaji [2 ,3 ]
Sambantham, Muthu [4 ]
Panneerselvam, Prabakaran [5 ]
Irfan, Ahmad [6 ]
机构
[1] Indo Amer Coll, Dept Phys, Cheyyar 604407, Tamil Nadu, India
[2] Thiru A Govindasamy Govt Arts Coll, Dept Phys, Tindivanam 604001, Tamil Nadu, India
[3] Thiruvalluvar Univ, Vellore, Tamil Nadu, India
[4] Arignar Anna Govt Arts Coll, Dept Phys, Cheyyar 604407, Tamil Nadu, India
[5] Loyola Coll, Dept Phys, Chennai 600034, Tamil Nadu, India
[6] King Khalid Univ, Coll Sci, Dept Chem, POB 9004, Abha 61413, Saudi Arabia
关键词
DFT; AIM; ELF & LOL; Vibrational study; NLO; Molecular docking; CRYSTAL-STRUCTURE; HUMAN ACETYLCHOLINESTERASE; VIBRATIONAL-SPECTRA; MOLECULAR-STRUCTURE; FT-IR; UV; NMR; NBO; INHIBITORS; HOMO;
D O I
10.1007/s11224-022-01930-2
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this study, the density functional theory (DFT) technique was used to investigate the structurally related three compounds of N-BgEE, N-Bg, and GEE. The optimized structures and topological parameters in vapor and liquid (polar & non-polar) phases were obtained with AIM, ELF, LOL, and RDG plots. The highest delocalization regions with chemical environments were found at O2 = C9-O1, O2 = C12-O1, and O2 = C7-O1 for N-BgEE, N-Bg, and GEE respectively, using this topological analysis. A relaxed PES scanning was performed through common functional groups (NH, C = O, & CO) of selected compounds to identify the possible conformers. A detailed harmonic vibrational frequency (IR and Raman) with assignments has been employed to find the structural correlation between the title compounds. Furthermore, in the liquid and gaseous state, the assessment of global reactive descriptors (FMOs) and atomic and local reactive descriptors (MEP & Fukui functions) are carried out, with the results revealing that the active sites of the compounds suitable for further docking research. The NLO properties of those three compounds are calculated and compared to one another. Molecular docking was also done, with results suggesting that the N-BgEE molecule produced the greatest interaction against Alzheimer's disease development protein.
引用
收藏
页码:1295 / 1319
页数:25
相关论文
共 51 条
  • [1] Abelman MM, 1997, US Patent, Patent No. [5:696231, 5696231]
  • [2] Conformational, Reactivity Analysis, Wavefunction-Based Properties, Molecular Docking and Simulations of a Benzamide Derivative with Potential Antitumor Activity-DFT and MD Simulations
    Al-Otaibi, Jamelah S.
    Mary, Y. Sheena
    Mary, Y. Shyma
    Thirunavukkarasu, M.
    Trivedi, Ravi
    Chakraborty, Brahmananda
    [J]. POLYCYCLIC AROMATIC COMPOUNDS, 2023, 43 (03) : 2015 - 2031
  • [3] Density functional theory, spectroscopic and hydrogen bonding analysis of fenoxycarb-water complexes
    Anju, L. S.
    Aruldhas, D.
    Joe, I. Hubert
    Balachandran, S.
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2020, 1201
  • [4] Crystal structure and Hirshfeld surface analysis of 7-ethoxy-5-methyl-2-(pyridin-3-yI)-11,12-di hydro5,11-methano[1,2,4]triazolo[1,5-c][1,3,5-Thenzoxadiazocine
    Aydemir, Ercan
    Kansiz, Sevgi
    Gumus, Mustafa Kemal
    Gorobets, Nikolay Yu
    Dege, Necmi
    [J]. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2018, 74 : 367 - +
  • [5] Drug-DNA interaction, a joint DFT-D3/MD study on safranal as an anticancer and DNA nanostructure model
    Azarhazin, Ebrahim
    Izadyar, Mohammad
    Housaindokht, Mohammad Reza
    [J]. CANADIAN JOURNAL OF CHEMISTRY, 2019, 97 (02) : 120 - 130
  • [6] Vibrational spectroscopic analysis of cyanopyrazine-2-carboxamide derivatives and investigation of their reactive properties by DFT calculations and molecular dynamics simulations
    Beegum, Shargina
    Mary, Y. Sheena
    Varghese, Herria Tresa
    Panicker, C. Yohannan
    Armakovic, Stevan
    Armakovic, Sanja J.
    Zitko, Jan
    Dolezal, Martin
    Van Alsenoy, C.
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2017, 1131 : 1 - 15
  • [7] Evaluation of electronic and biological interactions between N-[4-(Ethylsulfamoyl)phenyl]acetamide and some polar liquids (IEFPCM solvation model) with Fukui function and molecular docking analysis
    Bharathy, G.
    Prasana, Johanan Christian
    Muthu, S.
    Irfan, Ahmad
    Asif, Fazilath Basha
    Saral, A.
    Aayisha, S.
    Devi, R. Niranjana
    [J]. JOURNAL OF MOLECULAR LIQUIDS, 2021, 340
  • [8] Ligustrazine-Oleanolic Acid Glycine Derivative, G-TOA, Selectively Inhibited the Proliferation and Induced Apoptosis of Activated HSC-T6 Cells
    Bi, Siling
    Chu, Fuhao
    Wang, Mina
    Li, Bi
    Mao, Pei
    Zhang, Huazheng
    Wang, Penglong
    Guo, Wenbo
    Xu, Liang
    Ren, Liwei
    Lei, Haimin
    Zhang, Yuzhong
    [J]. MOLECULES, 2016, 21 (11)
  • [9] The structure and electronic property of the smallest C20-glycine and Gd-encapsulated C20-glycine derivatives with potentially biological activity
    Cao, Yang
    Wang, Dawei
    Liu, Bin
    Yao, Guijun
    Fu, Yutuo
    Li, Xiaojun
    Bi, Zhenggang
    [J]. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2013, 113 (10) : 1440 - 1446
  • [10] CATALYTIC POLYMERIZATION OF GLYCINE ETHYL ESTER
    CARTER, ME
    CARLSON, OK
    [J]. JOURNAL OF POLYMER SCIENCE PART A-GENERAL PAPERS, 1964, 2 (3PA): : 1493 - &