Genetic variation and evolutionary analysis of broad bean wilt virus 2

被引：36
作者：
Ferrer, Rosa M. [1 ]
Ferriol, Inmaculada [1 ]
Moreno, Pedro [1 ]
Guerri, Jose [1 ]
Rubio, Luis [1 ]
机构：
[1] IVIA, Valencia 46113, Spain
来源：
ARCHIVES OF VIROLOGY | 2011年 / 156卷 / 08期
关键词：
COMPLETE NUCLEOTIDE-SEQUENCE; CITRUS-TRISTEZA VIRUS; MILD MOSAIC-VIRUS; GENOME ORGANIZATION; MOLECULAR EVOLUTION; CHINESE ISOLATE; RNA; DNA; IDENTIFICATION; RECOMBINATION;
D O I：
10.1007/s00705-011-0990-3
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
The genetic variation and evolutionary mechanisms of broad bean wilt virus 2 (BBWV-2) were studied by nucleotide sequence analysis of four genomic regions of 30 isolates from different countries. Nucleotide diversity was high (0.198) for a plant virus. Phylogenetic and genetic structure analyses showed low population subdivision, suggesting a significant gene flow between distant geographic areas. Analysis of synonymous and nonsynonymous substitutions showed different negative selection pressures for different parts of the coding regions, but no positive selection was found. Several recombination detection methods showed that some BBWV-2 genomes might have originated from recombination or reassortment.
引用
收藏
页码：1445 / 1450
页数：6
相关论文
共 50 条
[31]   Evolutionary History and Genetic Variation of Zika Virus: Connection Between Thailand Zika Viruses and Global Outbreaks Strains [J].
Bahoussi, Amina Nawal ;
Shah, Pir Tariq ;
Liu, Yue ;
Guo, Yan-Yan ;
Bu, Hongli ;
Wu, Changxin ;
Xing, Li .
VECTOR-BORNE AND ZOONOTIC DISEASES, 2024, 24 (02) :122-128
[32]   Genetic variability and evolutionary dynamics of atypical Papaya ringspot virus infecting Papaya [J].
Saleem, Anam ;
Ali, Zahid ;
Yeh, Shyi-Dong ;
Saeed, Wajeeha ;
Imdad, Amna Binat ;
Akbar, Muhammad Faheem ;
Goodman, Richard E. ;
Naseem, Saadia .
PLOS ONE, 2021, 16 (10)
[33]   Apple Latent Spherical Virus Vector as Vaccine for the Prevention and Treatment of Mosaic Diseases in Pea, Broad Bean, and Eustoma Plants by Bean Yellow Mosaic Virus [J].
Satoh, Nozomi ;
Kon, Tatsuya ;
Yamagishi, Noriko ;
Takahashi, Tsubasa ;
Natsuaki, Tomohide ;
Yoshikawa, Nobuyuki .
VIRUSES-BASEL, 2014, 6 (11) :4242-4257
[34]   High levels of local inter- and intra-host genetic variation of West Nile virus and evidence of fine-scale evolutionary pressures [J].
Ehrbar, Dylan J. ;
Ngo, Kiet A. ;
Campbell, Scott R. ;
Kramer, Laura D. ;
Ciota, Alexander T. .
INFECTION GENETICS AND EVOLUTION, 2017, 51 :219-226
[35]   Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis [J].
Rivarola, Maximo ;
Foster, Jeffrey T. ;
Chan, Agnes P. ;
Williams, Amber L. ;
Rice, Danny W. ;
Liu, Xinyue ;
Melake-Berhan, Admasu ;
Creasy, Heather Huot ;
Puiu, Daniela ;
Rosovitz, M. J. ;
Khouri, Hoda M. ;
Beckstrom-Sternberg, Stephen M. ;
Allan, Gerard J. ;
Keim, Paul ;
Ravel, Jacques ;
Rabinowicz, Pablo D. .
PLOS ONE, 2011, 6 (07)
[36]   Genetic variation and phylogenetic analysis of porcine circovirus type 2 infections in central China [J].
Mu, Chunlong ;
Yang, Qingyuan ;
Zhang, Yina ;
Zhou, Yonghui ;
Zhang, Jixi ;
Martin, Darren P. ;
Xia, Pingan ;
Cui, Baoan .
VIRUS GENES, 2012, 45 (03) :463-473
[37]   Epidemiology, genetic diversity, and evolutionary dynamics of Tembusu virus [J].
Zhou, Peng ;
Ma, Bin ;
Gao, Yuan ;
Xu, Yumin ;
Li, Zhuofei ;
Jin, Hui ;
Luo, Rui .
ARCHIVES OF VIROLOGY, 2023, 168 (10)
[38]   The evolutionary and genetic patterns of African swine fever virus [J].
Cho, Myeongji ;
Min, Xianglan ;
Been, Nara ;
Son, Hyeon S. .
INFECTION GENETICS AND EVOLUTION, 2024, 122
[39]   Sources of Genetic Variation in Plant Virus Populations [J].
Balol, Gurupad B. ;
Divya, B. L. ;
Basavaraj, S. ;
Sundaresha, S. ;
Mahesh, Y. S. ;
Erayya ;
Huchannanavar, Shilpa D. .
JOURNAL OF PURE AND APPLIED MICROBIOLOGY, 2010, 4 (02) :803-808
[40]   Genetic and evolutionary analysis of emerging HoBi-like pestivirus [J].
Guo, Zhiyuan ;
Wang, Lin ;
Niu, Lingdi ;
Shangguan, Haikun ;
Huang, Chengshi ;
Yi, Ying ;
Zhang, Yannan ;
Gao, Mingchun ;
Ge, Junwei .
RESEARCH IN VETERINARY SCIENCE, 2021, 137 :217-225
12345