共 30 条
Studies on substrate specificity of Jmjd2a-c histone demethylases
被引:10
作者:

Ponnaluri, V. K. Chaithanya
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA

Vavilala, Divya Teja
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA

Mukherji, Mridul
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA
机构:
[1] Univ Missouri, Div Pharmaceut Sci, Sch Pharm, Kansas City, MO 64108 USA
关键词:
Epigenetics;
Demethylase;
Dioxygenase;
Enzyme assay;
Transcription regulation;
Jumonji domain;
PHYTANOYL-COA;
2-HYDROXYLASE;
HYPOXIA-INDUCIBLE FACTOR;
LYSINE METHYLTRANSFERASE;
KAPPA-B;
DOMAIN;
METHYLATION;
PROTEIN;
H3;
HYDROXYLATION;
RECOGNITION;
D O I:
10.1016/j.bbrc.2011.01.073
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Jumonji domain containing iron (II), 2-oxoglutarate (2OG)-dependent dioxygenases from Jmjd2 family demethylate trimethylated histone3-lysine 9 (H3-K9me3), and also H3-K9me2 and H3-K36me3, albeit at lower rates. Recently, we have identified the first non-histone substrates of JmjD2 demethylases. Here, we studied the substrate specificity of Jmjd2a-c demethylases using site-directed mutagenesis and novel non-histone substrates. We identified preference of Arg at -1 position and a smaller amino acid at -2 position using both singly and doubly mutated peptide substrates by Jmjd2a-c demethylases. Our results also identified similarities in substrate selectivity by H3-K9 methyltransferase, G9a and Jmjd2 demethylases despite their distinct reaction mechanisms. Published by Elsevier Inc.
引用
收藏
页码:588 / 592
页数:5
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共 30 条
- [1] Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions[J]. SCIENCE, 2009, 325 (5942) : 834 - 840Choudhary, Chunaram论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Univ Copenhagen, Fac Hlth Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark Max Planck Inst Biochem, D-82152 Martinsried, GermanyKumar, Chanchal论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, GermanyGnad, Florian论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, GermanyNielsen, Michael L.论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Univ Copenhagen, Fac Hlth Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark Max Planck Inst Biochem, D-82152 Martinsried, GermanyRehman, Michael论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, GermanyWalther, Tobias C.论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, GermanyOlsen, Jesper V.论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Univ Copenhagen, Fac Hlth Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark Max Planck Inst Biochem, D-82152 Martinsried, GermanyMann, Matthias论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Biochem, D-82152 Martinsried, Germany Univ Copenhagen, Fac Hlth Sci, Novo Nordisk Fdn Ctr Prot Res, DK-2200 Copenhagen, Denmark Max Planck Inst Biochem, D-82152 Martinsried, Germany
- [2] Regulation of p53 activity through lysine methylation[J]. NATURE, 2004, 432 (7015) : 353 - 360Chuikov, S论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAKurash, JK论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAWilson, JR论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAXiao, B论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAJustin, N论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAIvanov, GS论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAMcKinney, K论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USATempst, P论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAPrives, C论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAGamblin, SJ论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USABarlev, NA论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USA Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USAReinberg, D论文数: 0 引用数: 0 h-index: 0机构: Robert Wood Johnson Med Sch, Dept Biochem, Howard Hughes Med Inst, Div Nucl Acids Enzymol, Piscataway, NJ 08854 USA
- [3] Posttranslational hydroxylation of ankyrin repeats in IκB proteins by the hypoxia-inducible factor (HIF) asparaginyl hydroxylase, factor inhibiting HIF (FIH)[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (40) : 14767 - 14772Cockman, Matthew E.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandLancaster, David E.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandStolze, Ineke P.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandHewitson, Kirsty S.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandMcDonough, Michael A.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandColeman, Mathew L.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandColes, Charlotte H.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandYu, Xiaohong论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandHay, Ronald T.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandLey, Steven C.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandPugh, Christopher W.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandOldham, Neil J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandMasson, Norma论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandSchofield, Christopher J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, EnglandRatcliffe, Peter J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, England Univ Oxford, Henry Wellcome Bldg Mol Physiol, Oxford OX3 7BN, England
- [4] Asparaginyl hydroxylation of the notch ankyrin repeat domain by factor inhibiting hypoxia-inducible factor[J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (33) : 24027 - 24038Coleman, Mathew L.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandMcDonough, Michael A.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandHewitson, Kirsty S.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandColes, Charlotte论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandMecinovic, Jasmin论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandEdelmann, Mariola论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandCook, Kristina M.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandCockman, Matthew E.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandLancaster, David E.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandKessler, Benedikt M.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, EnglandOldham, Neil J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, England论文数: 引用数: h-index:机构:Schofield, Christopher J.论文数: 0 引用数: 0 h-index: 0机构: Univ Oxford, Chem Res Lab, Oxford OX1 3TA, England Univ Oxford, Chem Res Lab, Oxford OX1 3TA, England
- [5] Structural and functional analysis of SET8, a histone H4 Lys-20 methyltransferase[J]. GENES & DEVELOPMENT, 2005, 19 (12) : 1455 - 1465Couture, JF论文数: 0 引用数: 0 h-index: 0机构: Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USACollazo, E论文数: 0 引用数: 0 h-index: 0机构: Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USABrunzelle, JS论文数: 0 引用数: 0 h-index: 0机构: Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USATrievel, RC论文数: 0 引用数: 0 h-index: 0机构: Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA
- [6] A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability[J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2011, 18 (01) : 42 - +Esteve, Pierre-Olivier论文数: 0 引用数: 0 h-index: 0机构: New England Biolabs Inc, Ipswich, MA USA New England Biolabs Inc, Ipswich, MA USAChang, Yanqi论文数: 0 引用数: 0 h-index: 0机构: Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA New England Biolabs Inc, Ipswich, MA USASamaranayake, Mala论文数: 0 引用数: 0 h-index: 0机构: New England Biolabs Inc, Ipswich, MA USA New England Biolabs Inc, Ipswich, MA USAUpadhyay, Anup K.论文数: 0 引用数: 0 h-index: 0机构: Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA New England Biolabs Inc, Ipswich, MA USAHorton, John R.论文数: 0 引用数: 0 h-index: 0机构: Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA New England Biolabs Inc, Ipswich, MA USAFeehery, George R.论文数: 0 引用数: 0 h-index: 0机构: New England Biolabs Inc, Ipswich, MA USA New England Biolabs Inc, Ipswich, MA USACheng, Xiaodong论文数: 0 引用数: 0 h-index: 0机构: Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA New England Biolabs Inc, Ipswich, MA USAPradhan, Sriharsa论文数: 0 引用数: 0 h-index: 0机构: New England Biolabs Inc, Ipswich, MA USA New England Biolabs Inc, Ipswich, MA USA
- [7] Role for 53BP1 Tudor Domain Recognition of p53 Dimethylated at Lysine 382 in DNA Damage Signaling[J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (50) : 34660 - 34666Kachirskaia, Ioulia论文数: 0 引用数: 0 h-index: 0机构: Stanford Univ, Dept Biol, Stanford, CA 94305 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAShi, Xiaobing论文数: 0 引用数: 0 h-index: 0机构: Stanford Univ, Dept Biol, Stanford, CA 94305 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAYamaguchi, Hiroshi论文数: 0 引用数: 0 h-index: 0机构: NCI, Cell Biol Lab, NIH, Bethesda, MD 20892 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USATanoue, Kan论文数: 0 引用数: 0 h-index: 0机构: NCI, Cell Biol Lab, NIH, Bethesda, MD 20892 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAWen, Hong论文数: 0 引用数: 0 h-index: 0机构: Stanford Univ, Sch Med, Dept Pathol, Stanford, CA 94305 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAWang, Evelyn W.论文数: 0 引用数: 0 h-index: 0机构: Stanford Univ, Sch Med, Dept Pathol, Stanford, CA 94305 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAAppella, Ettore论文数: 0 引用数: 0 h-index: 0机构: NCI, Cell Biol Lab, NIH, Bethesda, MD 20892 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USAGozani, Or论文数: 0 引用数: 0 h-index: 0机构: Stanford Univ, Dept Biol, Stanford, CA 94305 USA Stanford Univ, Dept Biol, Stanford, CA 94305 USA
- [8] JmjC-domain-containing proteins and histone demethylation[J]. NATURE REVIEWS GENETICS, 2006, 7 (09) : 715 - 727Klose, Robert J.论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USAKallin, Eric M.论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USAZhang, Yi论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA Univ N Carolina, Dept Biochem & Biophys, Howard Hughes Med Inst, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA
- [9] The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36[J]. NATURE, 2006, 442 (7100) : 312 - 316Klose, Robert J.论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USAYamane, Kenichi论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USABae, Yangjin论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USAZhang, Dianzheng论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USAErdjument-Bromage, Hediye论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USATempst, Paul论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USAWong, Jiemin论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USAZhang, Yi论文数: 0 引用数: 0 h-index: 0机构: Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USA Univ N Carolina, Howard Hughes Med Inst, Chapel Hill, NC 27599 USA
- [10] Chromatin modifications and their function[J]. CELL, 2007, 128 (04) : 693 - 705Kouzarides, Tony论文数: 0 引用数: 0 h-index: 0机构: Univ Cambridge, Gurdon Inst, Cambridge CB2 1QN, England