The application of multivariate statistical techniques improves single-wavelength anomalous diffraction phasing

被引:59
作者
Pannu, NS
Read, RJ
机构
[1] Leiden Univ, Leiden Inst Chem, Gorlaeus Labs, Biophys Struct Chem, NL-2300 RA Leiden, Netherlands
[2] Cambridge Inst Med Res, Dept Haematol, Cambridge CB2 2XY, England
[3] Univ Cambridge Trinity Coll, Cambridge CB2 1TQ, England
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2004年 / 60卷
关键词
D O I
10.1107/S0907444903020808
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Recently, there has been a resurgence in phasing using the single- wavelength anomalous diffraction ( SAD) experiment; data from a single wavelength in combination with techniques such as density modification have been used to solve macromolecular structures, even with a very small anomalous signal. Here, a formulation for SAD phasing and refinement employing multivariate statistical techniques is presented. The equation developed accounts explicitly for the correlations among the observed and calculated Friedel mates in a SAD experiment. The correlated SAD equation has been implemented and test cases performed on real diffraction data have revealed better results compared with currently used programs in terms of correlation with the final map and obtaining more reliable phase probability statistics.
引用
收藏
页码:22 / 27
页数:6
相关论文
共 37 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   SINGLE ISOMORPHOUS REPLACEMENT METHOD [J].
BLOW, DM ;
ROSSMANN, MG .
ACTA CRYSTALLOGRAPHICA, 1961, 14 (11) :1195-&
[3]   THE TREATMENT OF ERRORS IN THE ISOMORPHOUS REPLACEMENT METHOD [J].
BLOW, DM ;
CRICK, FHC .
ACTA CRYSTALLOGRAPHICA, 1959, 12 (10) :794-802
[4]   Applications of single-wavelength anomalous dispersion at high and atomic resolution [J].
Brodersen, DE ;
de la Fortelle, E ;
Vonrhein, C ;
Bricogne, G ;
Nyborg, J ;
Kjeldgaard, M .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :431-441
[5]   MAD phasing:: probabilistic estimate of |Foa| [J].
Burla, MC ;
Carrozzini, B ;
Cascarano, GL ;
Giacovazzo, C ;
Polidori, G ;
Siliqi, D .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :928-935
[6]   Eigensystem analysis of the refinement of a small metalloprotein [J].
Cowtan, K ;
Ten Eyck, LF .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2000, 56 :842-856
[7]   Can anomalous signal of sulfur become a tool for solving protein crystal structures? [J].
Dauter, Z ;
Dauter, M ;
de La Fortelle, E ;
Bricogne, G ;
Sheldrick, GM .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (01) :83-92
[8]   Jolly SAD [J].
Dauter, Z ;
Dauter, M ;
Dodson, E .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 :494-506
[9]   Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy [J].
Dauter, Z ;
Adamiak, DA .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 :990-995
[10]   Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data [J].
de Graaff, RAG ;
Hilge, M ;
van der Plas, JL ;
Abrahams, JP .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2001, 57 :1857-1862