Bayesian Analysis of Growth Curves Using Mixed Models Defined by Stochastic Differential Equations

被引:45
作者
Donnet, Sophie [1 ]
Foulley, Jean-Louis
Samson, Adeline [2 ]
机构
[1] Univ Paris 09, CEREMADE, F-75775 Paris 16, France
[2] Univ Paris 05, Lab MAP5, Paris, France
关键词
Bayesian estimation; Euler-Maruyama scheme; Gompertz model; Growth curves; Mixed models; Predictive posterior distribution; Stochastic differential equation; SAEM ALGORITHM; IMPLEMENTATION; PARAMETERS;
D O I
10.1111/j.1541-0420.2009.01342.x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
P>Growth curve data consist of repeated measurements of a continuous growth process over time in a population of individuals. These data are classically analyzed by nonlinear mixed models. However, the standard growth functions used in this context prescribe monotone increasing growth and can fail to model unexpected changes in growth rates. We propose to model these variations using stochastic differential equations (SDEs) that are deduced from the standard deterministic growth function by adding random variations to the growth dynamics. A Bayesian inference of the parameters of these SDE mixed models is developed. In the case when the SDE has an explicit solution, we describe an easily implemented Gibbs algorithm. When the conditional distribution of the diffusion process has no explicit form, we propose to approximate it using the Euler-Maruyama scheme. Finally, we suggest validating the SDE approach via criteria based on the predictive posterior distribution. We illustrate the efficiency of our method using the Gompertz function to model data on chicken growth, the modeling being improved by the SDE approach.
引用
收藏
页码:733 / 741
页数:9
相关论文
共 50 条
  • [21] Mixed Effects Modeling Using Stochastic Differential Equations: Illustrated by Pharmacokinetic Data of Nicotinic Acid in Obese Zucker Rats
    Leander, Jacob
    Almquist, Joachim
    Ahlstrom, Christine
    Gabrielsson, Johan
    Jirstrand, Mats
    AAPS JOURNAL, 2015, 17 (03): : 586 - 596
  • [22] Infectious Disease Spread Analysis Using Stochastic Differential Equations for SIR Model
    Maki, Yoshihiro
    Hirose, Hideo
    FOURTH INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS, MODELLING AND SIMULATION (ISMS 2013), 2013, : 152 - 156
  • [23] Nonparametric Bayesian volatility estimation for gamma-driven stochastic differential equations
    Belomestny, Denis
    Gugushvili, Shota
    Schauer, Moritz
    Spreij, Peter
    BERNOULLI, 2022, 28 (04) : 2151 - 2180
  • [24] A Bayesian analysis of the effect of selection for growth rate on growth curves in rabbits
    Agustín Blasco
    Miriam Piles
    Luis Varona
    Genetics Selection Evolution, 35 (1)
  • [25] A Bayesian analysis of the effect of selection for growth rate on growth curves in rabbits
    Blasco, A
    Piles, M
    Varona, L
    GENETICS SELECTION EVOLUTION, 2003, 35 (01) : 21 - 41
  • [26] Modeling eBay price using stochastic differential equations
    Liu, Wei Wei
    Liu, Yan
    Chan, Ngai Hang
    JOURNAL OF FORECASTING, 2019, 38 (01) : 63 - 72
  • [27] Convergence analysis of a splitting method for stochastic differential equations
    Zhao, W.
    Tian, L.
    Ju, L.
    INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING, 2008, 5 (04) : 673 - 692
  • [28] Bayesian inference for stochastic kinetic models using a diffusion approximation
    Golightly, A
    Wilkinson, DJ
    BIOMETRICS, 2005, 61 (03) : 781 - 788
  • [29] Modernising fish and shark growth curves with Bayesian length-at-age models
    Smart, Jonathan J.
    Grammer, Gretchen L.
    PLOS ONE, 2021, 16 (02):
  • [30] A tutorial introduction to Bayesian inference for stochastic epidemic models using Approximate Bayesian Computation
    Kypraios, Theodore
    Neal, Peter
    Prangle, Dennis
    MATHEMATICAL BIOSCIENCES, 2017, 287 : 42 - 53