Effects of a Hydrophilic/Hydrophobic Interface on Amyloid-β Peptides Studied by Molecular Dynamics Simulations and NMR Experiments

被引:38
|
作者
Itoh, Satoru G. [1 ,2 ,3 ]
Yagi-Utsumi, Maho [1 ,2 ,4 ,5 ]
Kato, Koichi [1 ,2 ,4 ,5 ]
Okumura, Hisashi [1 ,2 ,3 ]
机构
[1] Natl Inst Nat Sci, Inst Mol Sci, Okazaki, Aichi 4448585, Japan
[2] Natl Inst Nat Sci, Exploratory Res Ctr Life & Living Syst ExCELLS, Okazaki, Aichi 4448585, Japan
[3] SOKENDAI Grad Univ Adv Studies, Dept Struct Mol Sci, Okazaki, Aichi 4448585, Japan
[4] SOKENDAI Grad Univ Adv Studies, Dept Funct Mol Sci, Okazaki, Aichi 4448787, Japan
[5] Nagoya City Univ, Grad Sch Pharmaceut Sci, Nagoya, Aichi 4658603, Japan
关键词
ALZHEIMERS-DISEASE; EXPERIMENTAL CONSTRAINTS; PROTEIN OLIGOMERIZATION; FIBRIL STRUCTURE; SHEET FORMATION; AMYLOID-BETA(29-42); AGGREGATION; DIMERS;
D O I
10.1021/acs.jpcb.8b11609
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Oligomer formation of amyloid-beta peptides (A beta) is accelerated at a hydrophilic/hydrophobic interface. However, details of the acceleration mechanism have not been elucidated. To understand the effects of the interface on oligomerization at the atomic level, we performed molecular dynamics simulations for an A beta 40 monomer in the presence and absence of the hydrophilic/hydrophobic interface. Nuclear magnetic resonance experiments of A beta 40 peptides with gangliosidic micelles were also carried out. In the simulations and experiments, the hydrophobic residues of A beta 40 bound to the interface stably. Moreover, we found that A beta 40 formed a hairpin structure at the interface more readily than in bulk water. From these results, we discussed the acceleration mechanism of the oligomer formation at the interface.
引用
收藏
页码:160 / 169
页数:10
相关论文
共 47 条
  • [1] Molecular dynamics simulations of amyloid-β peptides in heterogeneous environments
    Tachi, Yuhei
    Itoh, Satoru G.
    Okumura, Hisashi
    BIOPHYSICS AND PHYSICOBIOLOGY, 2022, 19
  • [2] Molecular Dynamics Simulations on the Binding of Fullerene to Amyloid-β Oligomers
    Zhou Xiao-Ying
    Xi Wen-Hui
    We Guang-Hong
    ACTA PHYSICO-CHIMICA SINICA, 2014, 30 (08) : 1587 - 1596
  • [3] Exploring Amyloid-β Dimer Structure Using Molecular Dynamics Simulations
    Mehrazma, Banafsheh
    Rauk, Arvi
    JOURNAL OF PHYSICAL CHEMISTRY A, 2019, 123 (22) : 4658 - 4670
  • [4] Distinct Binding Dynamics, Sites and Interactions of Fullerene and Fullerenols with Amyloid- Peptides Revealed by Molecular Dynamics Simulations
    Liu, Zhiwei
    Zou, Yu
    Zhang, Qingwen
    Chen, Peijie
    Liu, Yu
    Qian, Zhenyu
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (08)
  • [5] Interaction of Amyloid Inhibitor Proteins with Amyloid Beta Peptides: Insight from Molecular Dynamics Simulations
    Das, Payel
    Kang, Seung-gu
    Temple, Sally
    Belfort, Georges
    PLOS ONE, 2014, 9 (11):
  • [6] Dimerization Process of Amyloid-β(29-42) Studied by the Hamiltonian Replica-Permutation Molecular Dynamics Simulations
    Itoh, Satoru G.
    Okumura, Hisashi
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (39) : 11428 - 11436
  • [7] Edaravone inhibits the conformational transition of amyloid-β42: insights from molecular dynamics simulations
    Liu, Fufeng
    Ma, Zheng
    Sang, Jingcheng
    Lu, Fuping
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2020, 38 (08) : 2377 - 2388
  • [8] Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation
    Rezaei-Ghaleh, Nasrollah
    Parigi, Giacomo
    Zweckstetter, Markus
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2019, 10 (12) : 3369 - 3375
  • [9] Translational, rotational and internal dynamics of amyloid β-peptides (Aβ40 and Aβ42) from molecular dynamics simulations
    Bora, Ram Prasad
    Prabhakara, Rajeev
    JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (15)
  • [10] Molecular dynamics simulations of copper binding to N-terminus mutants of amyloid-β
    Kennedy-Britten, Oliver D.
    Al-Shammari, Nadiyah
    Platts, James A.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (06) : 2003 - 2013