Extending the Supramolecular Synthon Based Fragment Approach (SBFA) for Transferability of Multipole Charge Density Parameters to Monofluorobenzoic Acids and their Cocrystals with Isonicotinamide: Importance of C-H•••O, C-H•••F, and F•••F Intermolecular Regions

被引:57
作者
Hathwar, Venkatesha R. [1 ]
Thakur, Tejender S. [1 ]
Dubey, Ritesh [1 ]
Pavan, Mysore S. [1 ]
Row, Tayur N. Guru [1 ]
Desiraju, Gautam R. [1 ]
机构
[1] Indian Inst Sci, Solid State & Struct Chem Unit, Bangalore 560012, Karnataka, India
关键词
ELECTROSTATIC INTERACTION ENERGY; RAY-DIFFRACTION DATA; ATOM DATA-BANK; X-RAY; HYDROGEN-BONDS; AGOSTIC INTERACTIONS; ANISOTROPIC ATOM; LATTICE ENERGIES; SMALL-MOLECULE; WAVE-FUNCTIONS;
D O I
10.1021/jp2039866
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An extension of the supramolecular synthon-based fragment approach (SBFA) method for transferability of multipole charge density parameters to include weak supramolecular synthons is proposed. In particular, the SBFA method is applied to C-H center dot center dot center dot O, C-H center dot center dot center dot F, and F center dot center dot center dot F containing synthons. A high resolution charge density study has been performed on 4-fluorobenzoic acid to build a synthon library for C-H center dot center dot center dot F infinite chain interactions. Libraries for C-H center dot center dot center dot O and F center dot center dot center dot F synthons were taken from earlier work. The SBFA methodology was applied successfully to 2- and 3-fluorobenzoic acids, data sets for which were collected in a routine manner at 100 K, and the modularity of the synthons was demonstrated. Cocrystals of isonicotinamide with all three fluorobenzoic acids were also studied with the SBFA method. The topological analysis of inter- and intramolecular interaction regions was performed using Bader's AIM approach. This study shows that the SBFA method is generally applicable to generate charge density maps using information from multiple intermolecular regions.
引用
收藏
页码:12852 / 12863
页数:12
相关论文
共 78 条
[21]   SUPRAMOLECULAR SYNTHONS IN CRYSTAL ENGINEERING - A NEW ORGANIC-SYNTHESIS [J].
DESIRAJU, GR .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION IN ENGLISH, 1995, 34 (21) :2311-2327
[22]   Redetermination, invariom-model and multipole refinement Of L-ornithine hydrochloride [J].
Dittrich, B. ;
Munshi, P. ;
Spackman, M. A. .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2007, 63 :505-509
[23]   Introduction and validation of an invariom database for amino-acid, peptide and protein molecules [J].
Dittrich, B. ;
Huebschle, C. B. ;
Luger, P. ;
Spackman, M. A. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :1325-1335
[24]   Invarioms for improved absolute structure determination of light-atom crystal structures [J].
Dittrich, B ;
Strumpel, M ;
Schäfer, M ;
Spackman, MA ;
Koritsánszky, T .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2006, 62 :217-223
[25]   Towards extracting the charge density from normal-resolution data [J].
Dittrich, B. ;
Huebschle, C. B. ;
Holstein, J. J. ;
Fabbiani, F. P. A. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2009, 42 :1110-1121
[26]   A theoretical databank of transferable aspherical atoms and its application to electrostatic interaction energy calculations of macromolecules [J].
Dominiak, Paulina M. ;
Volkov, Anatoliy ;
Li, Xue ;
Messerschmidt, Marc ;
Coppens, Philip .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (01) :232-247
[27]   Combining crystallographic information and an aspherical-atom data bank in the evaluation of the electrostatic interaction energy in an enzyme-substrate complex: influenza neuraminidase inhibition [J].
Dominiak, Paulina M. ;
Volkov, Anatoliy ;
Dominiak, Adam P. ;
Jarzembska, Katarzyna N. ;
Coppens, Philip .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2009, 65 :485-499
[28]  
Dovesi R., 2009, Crystal09 User's Manual
[29]   Organic fluorine hardly ever accepts hydrogen bonds [J].
Dunitz, JD ;
Taylor, R .
CHEMISTRY-A EUROPEAN JOURNAL, 1997, 3 (01) :89-98
[30]  
Farrugia L. J., 1999, Journal of Applied Crystallography, V32, P837, DOI [DOI 10.1107/S0021889812029111, 10.1107/S0021889899006020, DOI 10.1107/S0021889899006020]