Optimal non-adaptive probabilistic group testing in general sparsity regimes

被引:7
作者
Bay, Wei Heng [1 ,2 ,3 ]
Scarlett, Jonathan [1 ,2 ,3 ]
Price, Eric [4 ]
机构
[1] Natl Univ Singapore, Dept Comp Sci, 15 Comp Dr, Singapore 117417, Singapore
[2] Natl Univ Singapore, Dept Math, 10 Lower Kent Ridge Rd, Singapore 119076, Singapore
[3] Natl Univ Singapore, Inst Data Sci, 3 Res Link, Singapore 117602, Singapore
[4] Univ Texas Austin, Dept Comp Sci, 2317 Speedway, Austin, TX 78712 USA
基金
美国国家科学基金会;
关键词
group testing; sparsity; information-theoretic limits; DEFECTIVE MEMBERS; BOUNDS;
D O I
10.1093/imaiai/iaab020
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
In this paper, we consider the problem of noiseless non-adaptive probabilistic group testing, in which the goal is high-probability recovery of the defective set. We show that in the case of n items among which k are defective, the smallest possible number of tests equals min{C(k,n)k log n, n} up to lower-order asymptotic terms, where C-k,C-n is a uniformly bounded constant (varying depending on the scaling of k with respect to n) with a simple explicit expression. The algorithmic upper bound follows from a minor adaptation of an existing analysis of the Definite Defectives algorithm, and the algorithm-independent lower bound builds on existing works for the regimes k <= n(1-Omega(1)) and k = circle minus(n). In sufficiently sparse regimes (including k = o(n/lg n)),our main result generalizes that of Coja-Oghlan et al. (2020) by avoiding the assumption k <= n(1-Omega(1)), whereas in sufficiently dense regimes (including k = omega(n/log n)), our main result shows that individual testing is asymptotically optimal for any non-zero target success probability, thus strengthening an existing result of Aldridge (2019, IEEE Trans. Inf. Theory, 65, 2058-2061) in terms of both the error probability and the assumed scaling of k.
引用
收藏
页码:1037 / 1053
页数:17
相关论文
共 30 条
[1]  
Aldridge M., 2020, CONSERVATIVE 2 STAGE
[2]   Group Testing: An Information Theory Perspective [J].
Aldridge, Matthew ;
Johnson, Oliver ;
Scarlett, Jonathan .
FOUNDATIONS AND TRENDS IN COMMUNICATIONS AND INFORMATION THEORY, 2019, 15 (3-4) :196-392
[3]  
Aldridge M, 2019, IEEE INT SYMP INFO, P236, DOI [10.1109/ISIT.2019.8849712, 10.1109/isit.2019.8849712]
[4]   Individual Testing Is Optimal for Nonadaptive Group Testing in the Linear Regime [J].
Aldridge, Matthew .
IEEE TRANSACTIONS ON INFORMATION THEORY, 2019, 65 (04) :2058-2061
[5]   Group Testing Algorithms: Bounds and Simulations [J].
Aldridge, Matthew ;
Baldassini, Leonardo ;
Johnson, Oliver .
IEEE TRANSACTIONS ON INFORMATION THEORY, 2014, 60 (06) :3671-3687
[6]   Boolean Compressed Sensing and Noisy Group Testing [J].
Atia, George K. ;
Saligrama, Venkatesh .
IEEE TRANSACTIONS ON INFORMATION THEORY, 2012, 58 (03) :1880-1901
[7]  
Baldassini L, 2013, IEEE INT SYMP INFO, P2676, DOI 10.1109/ISIT.2013.6620712
[8]   Noise-resilient group testing: Limitations and constructions [J].
Cheraghchi, Mahdi .
DISCRETE APPLIED MATHEMATICS, 2013, 161 (1-2) :81-95
[9]  
Chun Lam Chan, 2011, 2011 49th Annual Allerton Conference on Communication, Control, and Computing (Allerton), P1832
[10]  
Coja-Oghlan A., 2020, C LEARN THEOR COLT