Stochastic model for Soj relocation dynamics in Bacillus subtilis

被引:27
作者
Doubrovinski, K
Howard, M
机构
[1] Univ London Imperial Coll Sci Technol & Med, Dept Math, London SW7 2AZ, England
[2] Uppsala Univ, Biol Educ Ctr, S-75236 Uppsala, Sweden
关键词
bacteria; protein oscillations; Spo0J;
D O I
10.1073/pnas.0500529102
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The Bacillus subtilis Spo0J/Soj proteins, implicated in chromosome segregation and transcriptional regulation, show striking dynamics: Soj undergoes irregular relocations from pole to pole or nucleoid to nucleoid. Here, we report on a mathematical model of the Soj dynamics. Our model, which is closely based on the available experimental data, readily generates dynamic Soj relocations. We show that the irregularity of the relocations may be due to the stochastic nature of the underlying Spo0J/Soj interactions and diffusion. We propose explanations for the behavior of several Spo0J/Soj mutants, including the "freezing" of the Soj dynamics observed in filamentous cells. Our approach underlines the importance of incorporating stochastic effects when modeling spatiotemporal protein dynamics inside cells.
引用
收藏
页码:9808 / 9813
页数:6
相关论文
共 36 条
[1]   A role for division-site-selection protein MinD in regulation of internucleoid jumping of Soj (ParA) protein in Bacillus subtilis [J].
Autret, S ;
Errington, J .
MOLECULAR MICROBIOLOGY, 2003, 47 (01) :159-169
[2]   Genetic analysis of the chromosome segregation protein Spo0J of Bacillus subtilis:: evidence for separate domains involved in DNA binding and interactions with Soj protein [J].
Autret, S ;
Nair, R ;
Errington, J .
MOLECULAR MICROBIOLOGY, 2001, 41 (03) :743-755
[3]   Bacterial mitosis: partitioning protein ParA oscillates in spiral-shaped structures and positions plasmids at mid-cell [J].
Ebersbach, G ;
Gerdes, K .
MOLECULAR MICROBIOLOGY, 2004, 52 (02) :385-398
[4]   Stochastic gene expression in a single cell [J].
Elowitz, MB ;
Levine, AJ ;
Siggia, ED ;
Swain, PS .
SCIENCE, 2002, 297 (5584) :1183-1186
[5]   Protein mobility in the cytoplasm of Escherichia coli [J].
Elowitz, MB ;
Surette, MG ;
Wolf, PE ;
Stock, JB ;
Leibler, S .
JOURNAL OF BACTERIOLOGY, 1999, 181 (01) :197-203
[6]   Dynamic proteins and a cytoskeleton in bacteria [J].
Errington, J .
NATURE CELL BIOLOGY, 2003, 5 (03) :175-178
[7]   Dynamic, mitotic-like behavior of a bacterial protein required for accurate chromosome partitioning [J].
Glaser, P ;
Sharpe, ME ;
Raether, B ;
Perego, M ;
Ohlsen, K ;
Errington, J .
GENES & DEVELOPMENT, 1997, 11 (09) :1160-1168
[8]   Cellular organization by self-organization: mechanisms and models for Min protein dynamics [J].
Howard, M ;
Kruse, K .
JOURNAL OF CELL BIOLOGY, 2005, 168 (04) :533-536
[9]   A mechanism for polar protein localization in bacteria [J].
Howard, M .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 335 (02) :655-663
[10]   Pattern formation inside bacteria: Fluctuations due to the low copy number of proteins [J].
Howard, M ;
Rutenberg, AD .
PHYSICAL REVIEW LETTERS, 2003, 90 (12) :4