Deep Learning Enables Automatic Classification of Emphysema Pattern at CT

被引:112
作者
Humphries, Stephen M. [1 ]
Notary, Aleena M. [1 ]
Centeno, Juan Pablo [1 ]
Strand, Matthew J. [2 ]
Crapo, James D. [3 ]
Silverman, Edwin K. [4 ]
Lynch, David A. [1 ]
机构
[1] Natl Jewish Hlth, Dept Radiol, 1400 Jackson St, Denver, CO 80206 USA
[2] Natl Jewish Hlth, Div Biostat & Bioinformat, 1400 Jackson St, Denver, CO 80206 USA
[3] Natl Jewish Hlth, Dept Med, 1400 Jackson St, Denver, CO 80206 USA
[4] Brigham & Womens Hosp, Channing Div Network Med, 75 Francis St, Boston, MA 02115 USA
关键词
OBSTRUCTIVE PULMONARY-DISEASE; COMPUTED-TOMOGRAPHY; COPD; MANAGEMENT; DIAGNOSIS; DISTINCT;
D O I
10.1148/radiol.2019191022
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Background: Pattern of emphysema at chest CT, scored visually by using the Fleischner Society system, is associated with physiologic impairment and mortality risk. Purpose: To determine whether participant-level emphysema pattern could predict impairment and mortality when classified by using a deep learning method. Materials and Methods: This retrospective analysis of Genetic Epidemiology of COPD (COPDGene) study participants enrolled between 2007 and 2011 included those with baseline CT, visual emphysema scores, and survival data through 2018. Participants were partitioned into nonoverlapping sets of 2407 for algorithm training, 100 for validation and parameter tuning, and 7143 for testing.A deep learning algorithm using convolutional neural network and long short-term memory architectures was trained to classify pattern of emphysema according to Fleischner criteria. Deep learning scores were compared with visual scores and clinical parameters including pulmonary function tests. Cox proportional hazard models were used to evaluate relationships between emphysema scores and survival. The algorithm was also tested by using CT and clinical data in 1962 participants enrolled in the Evaluation of COPD Longitudinally to Identify Predictive Surrogate End-points (ECLIPSE) study. Results: A total of 7143 COPDGene participants (mean age 6 standard deviation, 59.8 years +/- 8.9; 3734 men and 3409 women) were evaluated. Deep learning emphysema classifications were associated with impaired pulmonary function tests, 6-minute walk distance, and St George's Respiratory Questionnaire at univariate analysis (P < .001 for each). Testing in the ECLIPSE cohort showed similar associations (P < .001). In the COPDGene test cohort, deep learning emphysema classification improved the fit of linear mixed models in the prediction of these clinical parameters compared with visual scoring (P < .001). Compared with participants without emphysema, mortality was greater in participants classified by the deep learning algorithm as having any grade of emphysema (adjusted hazard ratios were 1.5, 1.7, 2.9, 5.3, and 9.7, respectively, for trace, mild, moderate, confluent, and advanced destructive emphysema; P < .05). Conclusion: Deep learning automation of the Fleischner grade of emphysema at chest CT is associated with clinical measures of pulmonary insufficiency and the risk of mortality. (C) RSNA, 2019
引用
收藏
页码:434 / 444
页数:11
相关论文
共 32 条
[11]   Disease Staging and Prognosis in Smokers Using Deep Learning in Chest Computed Tomography [J].
Gonzalez, German ;
Ash, Samuel Y. ;
Vegas-Sanchez-Ferrero, Gonzalo ;
Onieva, Jorge Onieva ;
Rahaghi, Farbod N. ;
Ross, James C. ;
Diaz, Alejandro ;
Estepar, Raul San Jose ;
Washko, George R. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2018, 197 (02) :193-203
[12]  
Goodford P, 2006, METH PRIN MED CHEM, V27, P3
[13]   Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs [J].
Gulshan, Varun ;
Peng, Lily ;
Coram, Marc ;
Stumpe, Martin C. ;
Wu, Derek ;
Narayanaswamy, Arunachalam ;
Venugopalan, Subhashini ;
Widner, Kasumi ;
Madams, Tom ;
Cuadros, Jorge ;
Kim, Ramasamy ;
Raman, Rajiv ;
Nelson, Philip C. ;
Mega, Jessica L. ;
Webster, R. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2016, 316 (22) :2402-2410
[14]   Visual Assessment of Chest Computed Tomographic Images Is Independently Useful for Genetic Association Analysis in Studies of Chronic Obstructive Pulmonary Disease [J].
Halper-Stromberg, Eitan ;
Cho, Michael H. ;
Wilson, Carla ;
Nevrekar, Dipti ;
Crapo, James D. ;
Washko, George ;
Estepar, Raul San Jose ;
Lynch, David A. ;
Silverman, Edwin K. ;
Leach, Sonia ;
Castaldi, Peter J. .
ANNALS OF THE AMERICAN THORACIC SOCIETY, 2017, 14 (01) :33-40
[15]   A SELF-COMPLETE MEASURE OF HEALTH-STATUS FOR CHRONIC AIR-FLOW LIMITATION - THE ST-GEORGES RESPIRATORY QUESTIONNAIRE [J].
JONES, PW ;
QUIRK, FH ;
BAVEYSTOCK, CM ;
LITTLEJOHNS, P .
AMERICAN REVIEW OF RESPIRATORY DISEASE, 1992, 145 (06) :1321-1327
[16]   Improving Detection of Early Chronic Obstructive Pulmonary Disease [J].
Labaki, Wassim W. ;
Han, MeiLan K. .
ANNALS OF THE AMERICAN THORACIC SOCIETY, 2018, 15 :S243-S248
[17]   The Role of Chest Computed Tomography in the Evaluation and Management of the Patient with Chronic Obstructive Pulmonary Disease [J].
Labaki, Wassim W. ;
Martinez, Carlos H. ;
Martinez, Fernando J. ;
Galban, Craig J. ;
Ross, Brian D. ;
Washko, George R. ;
Barr, R. Graham ;
Regan, Elizabeth A. ;
Coxson, Harvey O. ;
Hoffman, Eric A. ;
Newell, John D., Jr. ;
Curran-Everett, Douglas ;
Hogg, James C. ;
Crapo, James D. ;
Lynch, David A. ;
Kazerooni, Ella A. ;
Han, MeiLan K. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2017, 196 (11) :1372-1379
[18]   Deep Learning at Chest Radiography: Automated Classification of Pulmonary Tuberculosis by Using Convolutional Neural Networks [J].
Lakhani, Paras ;
Sundaram, Baskaran .
RADIOLOGY, 2017, 284 (02) :574-582
[19]   CT-based Visual Classification of Emphysema: Association with Mortality in the COPDGene Study [J].
Lynch, David A. ;
Moore, Camille M. ;
Wilson, Carla ;
Nevrekar, Dipti ;
Jennermann, Theodore ;
Humphries, Stephen M. ;
Austin, John H. M. ;
Grenier, Philippe A. ;
Kauczor, Hans-Ulrich ;
Han, MeiLan K. ;
Regan, Elizabeth A. ;
Make, Barry J. ;
Bowler, Russell R. ;
Beaty, Terri H. ;
Curran-Everett, Douglas ;
Hokanson, John E. ;
Curtis, Jeffrey L. ;
Silverman, Edwin K. ;
Crapo, James D. .
RADIOLOGY, 2018, 288 (03) :859-866
[20]   CT-Definable Subtypes of Chronic Obstructive Pulmonary Disease: A Statement of the Fleischner Society [J].
Lynch, David A. ;
Austin, John H. M. ;
Hogg, James C. ;
Grenier, Philippe A. ;
Kauczor, Hans-Ulrich ;
Bankier, Alexander A. ;
Barr, R. Graham ;
Colby, Thomas V. ;
Galvin, Jeffrey R. ;
Gevenois, Pierre Alain ;
Coxson, Harvey O. ;
Hoffman, Eric A. ;
Newell, John D., Jr. ;
Pistolesi, Massimo ;
Silverman, Edwin K. ;
Crapo, James D. .
RADIOLOGY, 2015, 277 (01) :192-205