Fungarium specimens: a largely untapped source in global change biology and beyond

被引:43
作者
Andrew, Carrie [1 ]
Diez, Jeffrey [2 ]
James, Timothy Y. [3 ]
Kauserud, Havard [4 ]
机构
[1] Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland
[2] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[3] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[4] Univ Oslo, Dept Biosci, Sect Genet & Evolutionary Biol EVOGENE, POB 1066 Blindern, N-0316 Oslo, Norway
基金
瑞士国家科学基金会;
关键词
fungarium specimens; red-listing; species distribution modelling; phenology; invasive species; ancient DNA; SPECIES DISTRIBUTION MODELS; FUNGUS AMANITA-PHALLOIDES; COMMUNITY STRUCTURE; CITIZEN SCIENCE; SOIL CARBON; HERBARIUM; CONSERVATION; CLIMATE; DIVERSITY; PATTERNS;
D O I
10.1098/rstb.2017.0392
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
For several hundred years, millions of fungal sporocarps have been collected and deposited in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale digitization programs, metadata associated with the records are now becoming publicly available, including information on taxonomy, sampling location, collection date and habitat/substrate information. This metadata, as well as data extracted from the physical fungarium specimens themselves, such as DNA sequences and biochemical characteristics, provide a rich source of information not only for taxonomy but also for other lines of biological inquiry. Here, we highlight and discuss how this information can be used to investigate emerging topics in fungal global change biology and beyond. Fungarium data are a prime source of knowledge on fungal distributions and richness patterns, and for assessing red-listed and invasive species. Information on collection dates has been used to investigate shifts in fungal distributions as well as phenology of sporocarp emergence in response to climate change. In addition to providing material for taxonomy and systematics, DNA sequences derived from the physical specimens provide information about fungal demography, dispersal patterns, and are emerging as a source of genomic data. As DNA analysis technologies develop further, the importance of fungarium specimens as easily accessible sources of information will likely continue to grow. This article is part of the theme issue 'Biological collections for understanding biodiversity in the Anthropocene'.
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页数:11
相关论文
共 78 条
[61]   Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi [J].
Schoch, Conrad L. ;
Robbertse, Barbara ;
Robert, Vincent ;
Duong Vu ;
Cardinali, Gianluigi ;
Irinyi, Laszlo ;
Meyer, Wieland ;
Nilsson, R. Henrik ;
Hughes, Karen ;
Miller, Andrew N. ;
Kirk, Paul M. ;
Abarenkov, Kessy ;
Aime, M. Catherine ;
Ariyawansa, Hiran A. ;
Bidartondo, Martin ;
Boekhout, Teun ;
Buyck, Bart ;
Cai, Qing ;
Chen, Jie ;
Crespo, Ana ;
Crous, Pedro W. ;
Damm, Ulrike ;
De Beer, Z. Wilhelm ;
Dentinger, Bryn T. M. ;
Divakar, Pradeep K. ;
Duenas, Margarita ;
Feau, Nicolas ;
Fliegerova, Katerina ;
Garcia, Miguel A. ;
Ge, Zai-Wei ;
Griffith, GarethW. ;
Groenewald, Johannes Z. ;
Groenewald, Marizeth ;
Grube, Martin ;
Gryzenhout, Marieka ;
Gueidan, Cecile ;
Guo, Liangdong ;
Hambleton, Sarah ;
Hamelin, Richard ;
Hansen, Karen ;
Hofstetter, Valerie ;
Hong, Seung-Beom ;
Houbraken, Jos ;
Hyde, Kevin D. ;
Inderbitzin, Patrik ;
Johnston, Peter R. ;
Karunarathna, Samantha C. ;
Koljalg, Urmas ;
Kovacs, Gabor M. ;
Kraichak, Ekaphan .
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2014,
[62]   Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses [J].
Seitzman, Brian H. ;
Ouimette, Andrew ;
Mixon, Rachel L. ;
Hobbie, Erik A. ;
Hibbett, David S. .
MYCOLOGIA, 2011, 103 (02) :280-290
[63]  
Senn-Irlet B, 2007, GUIDANCE FOR CONSERV
[64]   A phylogeographic survey of a circumboreal polypore indicates introgression among ecologically differentiated cryptic lineages [J].
Skaven Seierstad, Kristian ;
Carlsen, Tor ;
Saetre, Glenn-Peter ;
Miettinen, Otto ;
Hellik Hofton, Tom ;
Kauserud, Havard .
FUNGAL ECOLOGY, 2013, 6 (01) :119-128
[65]   Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens [J].
Staats, Martijn ;
Erkens, Roy H. J. ;
van de Vossenberg, Bart ;
Wieringa, Jan J. ;
Kraaijeveld, Ken ;
Stielow, Benjamin ;
Geml, Jozsef ;
Richardson, James E. ;
Bakker, Freek T. .
PLOS ONE, 2013, 8 (07)
[66]   Species richness, abundance, and phenology of fungal fruit bodies over 21 years in a Swiss forest plot [J].
Straatsma, G ;
Ayer, F ;
Egli, S .
MYCOLOGICAL RESEARCH, 2001, 105 :515-523
[67]   Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens [J].
Tedersoo, Leho ;
Liiv, Ingrid ;
Kivistik, Paula Ann ;
Anslan, Sten ;
Koljalg, Urmas ;
Bahram, Mohammad .
MYCOKEYS, 2016, (13) :1-20
[68]   Global diversity and geography of soil fungi [J].
Tedersoo, Leho ;
Bahram, Mohammad ;
Polme, Sergei ;
Koljalg, Urmas ;
Yorou, Nourou S. ;
Wijesundera, Ravi ;
Villarreal Ruiz, Luis ;
Vasco-Palacios, Aida M. ;
Pham Quang Thu ;
Suija, Ave ;
Smith, Matthew E. ;
Sharp, Cathy ;
Saluveer, Erki ;
Saitta, Alessandro ;
Rosas, Miguel ;
Riit, Taavi ;
Ratkowsky, David ;
Pritsch, Karin ;
Poldmaa, Kadri ;
Piepenbring, Meike ;
Phosri, Cherdchai ;
Peterson, Marko ;
Parts, Kaarin ;
Paertel, Kadri ;
Otsing, Eveli ;
Nouhra, Eduardo ;
Njouonkou, Andre L. ;
Nilsson, R. Henrik ;
Morgado, Luis N. ;
Mayor, Jordan ;
May, Tom W. ;
Majuakim, Luiza ;
Lodge, D. Jean ;
Lee, Su See ;
Larsson, Karl-Henrik ;
Kohout, Petr ;
Hosaka, Kentaro ;
Hiiesalu, Indrek ;
Henkel, Terry W. ;
Harend, Helery ;
Guo, Liang-dong ;
Greslebin, Alina ;
Grelet, Gwen ;
Geml, Jozsef ;
Gates, Genevieve ;
Dunstan, William ;
Dunk, Chris ;
Drenkhan, Rein ;
Dearnaley, John ;
De Kesel, Andre .
SCIENCE, 2014, 346 (6213) :1078-+
[69]   The Macrofungi Collection Consortium [J].
Thiers, Barbara M. ;
Halling, Roy E. .
APPLICATIONS IN PLANT SCIENCES, 2018, 6 (02)
[70]   Environment and host as large-scale controls of ectomycorrhizal fungi [J].
van der Linde, Sietse ;
Suz, Laura M. ;
Orme, C. David L. ;
Cox, Filipa ;
Andreae, Henning ;
Asi, Endla ;
Atkinson, Bonnie ;
Benham, Sue ;
Carroll, Christopher ;
Cools, Nathalie ;
De Vos, Bruno ;
Dietrich, Hans-Peter ;
Eichhorn, Johannes ;
Gehrmann, Joachim ;
Grebenc, Tine ;
Gweon, Hyun S. ;
Hansen, Karin ;
Jacob, Frank ;
Kristoefel, Ferdinand ;
Lech, Pawel ;
Manninger, Miklos ;
Martin, Jan ;
Meesenburg, Henning ;
Merila, Paivi ;
Nicolas, Manuel ;
Pavlenda, Pavel ;
Rautio, Pasi ;
Schaub, Marcus ;
Schroeck, Hans-Werner ;
Seidling, Walter ;
Sramek, Vit ;
Thimonier, Anne ;
Thomsen, Iben Margrete ;
Titeux, Hugues ;
Vanguelova, Elena ;
Verstraeten, Arne ;
Vesterdal, Lars ;
Waldner, Peter ;
Wijk, Sture ;
Zhang, Yuxin ;
Zlindra, Daniel ;
Bidartondo, Martin I. .
NATURE, 2018, 558 (7709) :243-+