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Fungarium specimens: a largely untapped source in global change biology and beyond
被引:43
作者:

Andrew, Carrie
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Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland

Diez, Jeffrey
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Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland

James, Timothy Y.
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Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland

Kauserud, Havard
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Univ Oslo, Dept Biosci, Sect Genet & Evolutionary Biol EVOGENE, POB 1066 Blindern, N-0316 Oslo, Norway Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland
机构:
[1] Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland
[2] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[3] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[4] Univ Oslo, Dept Biosci, Sect Genet & Evolutionary Biol EVOGENE, POB 1066 Blindern, N-0316 Oslo, Norway
基金:
瑞士国家科学基金会;
关键词:
fungarium specimens;
red-listing;
species distribution modelling;
phenology;
invasive species;
ancient DNA;
SPECIES DISTRIBUTION MODELS;
FUNGUS AMANITA-PHALLOIDES;
COMMUNITY STRUCTURE;
CITIZEN SCIENCE;
SOIL CARBON;
HERBARIUM;
CONSERVATION;
CLIMATE;
DIVERSITY;
PATTERNS;
D O I:
10.1098/rstb.2017.0392
中图分类号:
Q [生物科学];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
For several hundred years, millions of fungal sporocarps have been collected and deposited in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale digitization programs, metadata associated with the records are now becoming publicly available, including information on taxonomy, sampling location, collection date and habitat/substrate information. This metadata, as well as data extracted from the physical fungarium specimens themselves, such as DNA sequences and biochemical characteristics, provide a rich source of information not only for taxonomy but also for other lines of biological inquiry. Here, we highlight and discuss how this information can be used to investigate emerging topics in fungal global change biology and beyond. Fungarium data are a prime source of knowledge on fungal distributions and richness patterns, and for assessing red-listed and invasive species. Information on collection dates has been used to investigate shifts in fungal distributions as well as phenology of sporocarp emergence in response to climate change. In addition to providing material for taxonomy and systematics, DNA sequences derived from the physical specimens provide information about fungal demography, dispersal patterns, and are emerging as a source of genomic data. As DNA analysis technologies develop further, the importance of fungarium specimens as easily accessible sources of information will likely continue to grow. This article is part of the theme issue 'Biological collections for understanding biodiversity in the Anthropocene'.
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Smithsonian Trop Res Inst, Balboa, Ancon, Panama Univ Texas Austin, Dept Integrat Biol, Grad Program Ecol Evolut & Behav, Austin, TX 78712 USA

Finzi, Adrien C.
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Boston Univ, Dept Biol, Boston, MA 02215 USA Univ Texas Austin, Dept Integrat Biol, Grad Program Ecol Evolut & Behav, Austin, TX 78712 USA