The mutational landscape of normal human endometrial epithelium

被引:338
作者
Moore, Luiza [1 ,2 ]
Leongamornlert, Daniel [1 ]
Coorens, Tim H. H. [1 ]
Sanders, Mathijs A. [1 ,3 ]
Ellis, Peter [1 ,4 ]
Dentro, Stefan C. [1 ,5 ]
Dawson, Kevin J. [1 ]
Butler, Tim [1 ]
Rahbari, Raheleh [1 ]
Mitchell, Thomas J. [1 ]
Maura, Francesco [1 ,6 ]
Nangalia, Jyoti [1 ]
Tarpey, Patrick S. [1 ]
Brunner, Simon F. [1 ]
Lee-Six, Henry [1 ]
Hooks, Yvette [1 ]
Moody, Sarah [1 ]
Mahbubani, Krishnaa T. [7 ,8 ,9 ]
Jimenez-Linan, Mercedes [2 ]
Brosens, Jan J. [10 ]
Iacobuzio-Donahue, Christine A. [11 ,12 ]
Martincorena, Inigo [1 ]
Saeb-Parsy, Kourosh [7 ,8 ]
Campbell, Peter J. [1 ]
Stratton, Michael R. [1 ]
机构
[1] Wellcome Sanger Inst, CASM, Cambridge, England
[2] Cambridge Univ Hosp NHS Fdn Trust, Dept Pathol, Cambridge, England
[3] Erasmus MC, Dept Hematol, Rotterdam, Netherlands
[4] Inivata Ltd, Cambridge, England
[5] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge, England
[6] Mem Sloan Kettering Canc Ctr, Dept Med, Myeloma Serv, 1275 York Ave, New York, NY 10021 USA
[7] Univ Cambridge, Dept Surg, Cambridge, England
[8] Cambridge NIHR Biomed Res Ctr, Cambridge, England
[9] Univ Cambridge, Dept Haematol, Cambridge, England
[10] Univ Warwick, Warwick Med Sch, Tommys Natl Miscarriage Res Ctr, Coventry, W Midlands, England
[11] Mem Sloan Kettering Canc Ctr, Dept Pathol, 1275 York Ave, New York, NY 10021 USA
[12] Mem Sloan Kettering Canc Ctr, Human Oncol & Pathogenesis Program, 1275 York Ave, New York, NY 10021 USA
基金
瑞士国家科学基金会; 英国惠康基金;
关键词
CANCER-ASSOCIATED MUTATIONS; SOMATIC MUTATIONS; STEM-CELLS; CLONAL HEMATOPOIESIS; RISK; DIVERSIFICATION; EXPANSION; SELECTION; PATTERN;
D O I
10.1038/s41586-020-2214-z
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
All normal somatic cells are thought to acquire mutations, but understanding of the rates, patterns, causes and consequences of somatic mutations in normal cells is limited. The uterine endometrium adopts multiple physiological states over a lifetime and is lined by a gland-forming epithelium(1,2). Here, using whole-genome sequencing, we show that normal human endometrial glands are clonal cell populations with total mutation burdens that increase at about 29 base substitutions per year and that are many-fold lower than those of endometrial cancers. Normal endometrial glands frequently carry 'driver' mutations in cancer genes, the burden of which increases with age and decreases with parity. Cell clones with drivers often originate during the first decades of life and subsequently progressively colonize the epithelial lining of the endometrium. Our results show that mutational landscapes differ markedly between normal tissues-perhaps shaped by differences in their structure and physiology-and indicate that the procession of neoplastic change that leads to endometrial cancer is initiated early in life. Whole-genome sequencing of normal human endometrial glands shows that most are clonal cell populations and frequently carry cancer driver mutations that occur early in life, and that parity has a protective effect.
引用
收藏
页码:640 / +
页数:24
相关论文
共 54 条
[1]   The repertoire of mutational signatures in human cancer [J].
Alexandrov, Ludmil B. ;
Kim, Jaegil ;
Haradhvala, Nicholas J. ;
Huang, Mi Ni ;
Ng, Alvin Wei Tian ;
Wu, Yang ;
Boot, Arnoud ;
Covington, Kyle R. ;
Gordenin, Dmitry A. ;
Bergstrom, Erik N. ;
Islam, S. M. Ashiqul ;
Lopez-Bigas, Nuria ;
Klimczak, Leszek J. ;
McPherson, John R. ;
Morganella, Sandro ;
Sabarinathan, Radhakrishnan ;
Wheeler, David A. ;
Mustonen, Ville ;
Getz, Gad ;
Rozen, Steven G. ;
Stratton, Michael R. .
NATURE, 2020, 578 (7793) :94-+
[2]   Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[3]   Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors [J].
Anderson, Nathaniel D. ;
de Borja, Richard ;
Young, Matthew D. ;
Fuligni, Fabio ;
Rosic, Andrej ;
Roberts, Nicola D. ;
Hajjar, Simon ;
Layeghifard, Mehdi ;
Novokmet, Ana ;
Kowalski, Paul E. ;
Anaka, Matthew ;
Davidson, Scott ;
Zarrei, Mehdi ;
Said, Badr Id ;
Schreiner, L. Christine ;
Marchand, Remi ;
Sitter, Joseph ;
Gokgoz, Nalan ;
Brunga, Ledia ;
Graham, Garrett T. ;
Fullam, Anthony ;
Pillay, Nischalan ;
Toretsky, Jeffrey A. ;
Yoshida, Akihiko ;
Shibata, Tatsuhiro ;
Metzler, Markus ;
Somers, Gino R. ;
Scherer, Stephen W. ;
Flanagan, Adrienne M. ;
Campbell, Peter J. ;
Schiffman, Joshua D. ;
Shago, Mary ;
Alexandrov, Ludmil B. ;
Wunder, Jay S. ;
Andrulis, Irene L. ;
Malkin, David ;
Behjati, Sam ;
Shlien, Adam .
SCIENCE, 2018, 361 (6405)
[4]   Cancer-Associated Mutations in Endometriosis without Cancer [J].
Anglesio, M. S. ;
Papadopoulos, N. ;
Ayhan, A. ;
Nazeran, T. M. ;
Noe, M. ;
Horlings, H. M. ;
Lum, A. ;
Jones, S. ;
Senz, J. ;
Seckin, T. ;
Ho, J. ;
Wu, R. -C. ;
Lac, V. ;
Ogawa, H. ;
Tessier-Cloutier, B. ;
Alhassan, R. ;
Wang, A. ;
Wang, Y. ;
Cohen, J. D. ;
Wong, F. ;
Hasanovic, A. ;
Orr, N. ;
Zhang, M. ;
Popoli, M. ;
McMahon, W. ;
Wood, L. D. ;
Mattox, A. ;
Allaire, C. ;
Segars, J. ;
Williams, C. ;
Tomasetti, C. ;
Boyd, N. ;
Kinzler, K. W. ;
Gilks, C. B. ;
Diaz, L. ;
Wang, T. -L. ;
Vogelstein, B. ;
Yong, P. J. ;
Huntsman, D. G. ;
Shih, I. -M. .
NEW ENGLAND JOURNAL OF MEDICINE, 2017, 376 (19) :1835-1848
[5]   Lgr5+ve Stem Cells Drive Self-Renewal in the Stomach and Build Long-Lived Gastric Units In Vitro [J].
Barker, Nick ;
Huch, Meritxell ;
Kujala, Pekka ;
van de Wetering, Marc ;
Snippert, Hugo J. ;
van Es, Johan H. ;
Sato, Toshiro ;
Stange, Daniel E. ;
Begthel, Harry ;
van den Born, Maaike ;
Danenberg, Esther ;
van den Brink, Stieneke ;
Korving, Jeroen ;
Abo, Arie ;
Peters, Peter J. ;
Wright, Nick ;
Poulsom, Richard ;
Clevers, Hans .
CELL STEM CELL, 2010, 6 (01) :25-36
[6]   Tissue-specific mutation accumulation in human adult stem cells during life [J].
Blokzijl, Francis ;
de Ligt, Joep ;
Jager, Myrthe ;
Sasselli, Valentina ;
Roerink, Sophie ;
Sasaki, Nobuo ;
Huch, Meritxell ;
Boymans, Sander ;
Kuijk, Ewart ;
Prins, Pjotr ;
Nijman, Isaac J. ;
Martincorena, Inigo ;
Mokry, Michal ;
Wiegerinck, Caroline L. ;
Middendorp, Sabine ;
Sato, Toshiro ;
Schwank, Gerald ;
Nieuwenhuis, Edward E. S. ;
Verstegen, Monique M. A. ;
van der Laan, Luc J. W. ;
de Jonge, Jeroen ;
IJzermans, Jan N. M. ;
Vries, Robert G. ;
van de Wetering, Marc ;
Stratton, Michael R. ;
Clevers, Hans ;
Cuppen, Edwin ;
van Boxtel, Ruben .
NATURE, 2016, 538 (7624) :260-+
[7]   Somatic mutations and clonal dynamics in healthy and cirrhotic human liver [J].
Brunner, Simon F. ;
Roberts, Nicola D. ;
Wylie, Luke A. ;
Moore, Luiza ;
Aitken, Sarah J. ;
Davies, Susan E. ;
Sanders, Mathijs A. ;
Ellis, Pete ;
Alder, Chris ;
Hooks, Yvette ;
Abascal, Federico ;
Stratton, Michael R. ;
Martincorena, Inigo ;
Hoare, Matthew ;
Campbell, Peter J. .
NATURE, 2019, 574 (7779) :538-+
[8]   JBrowse: a dynamic web platform for genome visualization and analysis [J].
Buels, Robert ;
Yao, Eric ;
Diesh, Colin M. ;
Hayes, Richard D. ;
Munoz-Torres, Monica ;
Helt, Gregg ;
Goodstein, David M. ;
Elsik, Christine G. ;
Lewis, Suzanna E. ;
Stein, Lincoln ;
Holmes, Ian H. .
GENOME BIOLOGY, 2016, 17
[9]  
CRUK, UT CANC RISK
[10]   MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation [J].
Diep Thi Hoang ;
Le Sy Vinh ;
Flouri, Tomas ;
Stamatakis, Alexandros ;
von Haeseler, Arndt ;
Bui Quang Minh .
BMC EVOLUTIONARY BIOLOGY, 2018, 18