Exploring three-dimensional quantitative structural activity relationship (3D-QSAR) analysis of SCH 66336 (Sarasar) analogues of farnesyltransferase inhibitors

被引:21
作者
Equbal, Tabish [1 ]
Silakari, Om [1 ]
Ravikumar, Muttineni [2 ]
机构
[1] Punjabi Univ, Dept Pharmaceut Sci& Drug Res, Patiala 147002, Punjab, India
[2] GVK Biosci Pvt Ltd, Hyderabad 500016, Andhra Pradesh, India
关键词
QSkR; farnesyltransferase inhibitors; molecular field analysis; anti-cancer; genetic partial least squares (G/PLS) method;
D O I
10.1016/j.ejmech.2007.02.013
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
3D-QSAR analysis of a set of 37 analogues of SCH 66336 (Sarasar) was performed by most widely used computational tool, molecular field analysis (MFA) to investigate the substitutional requirements for the favorable receptor-drug interaction and to derive a predictive model that may be used for the designing of a novel farnesyltransferase inhibitors (FTIs). Regression analysis was carried out using genetic partial least squares (G/PLS) method. A highly predictive and statistically significant model was generated. The predictive ability of the model developed was assessed using a test set of six compounds (r(pred)(2) as high as 0.791). The analyzed MFA model has demonstrated a good fit, having r(2) value of 0.967 and cross-validated coefficient r(cv)(2) value as 0.921. (C) 2007 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:204 / 209
页数:6
相关论文
共 20 条
[1]   Protein farnesyltransferase inhibitors [J].
Ayral-Kaloustian, S ;
Salaski, EJ .
CURRENT MEDICINAL CHEMISTRY, 2002, 9 (10) :1003-1032
[2]  
Bishop WR, 2003, CANCER BIOL THER, V2, pS96
[3]   Farnesyl transferase inhibitors in clinical development [J].
Caponigro, F ;
Casale, M ;
Bryce, J .
EXPERT OPINION ON INVESTIGATIONAL DRUGS, 2003, 12 (06) :943-954
[4]   THE DEVELOPMENT AND USE OF QUANTUM-MECHANICAL MOLECULAR-MODELS .76. AM1 - A NEW GENERAL-PURPOSE QUANTUM-MECHANICAL MOLECULAR-MODEL [J].
DEWAR, MJS ;
ZOEBISCH, EG ;
HEALY, EF ;
STEWART, JJP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (13) :3902-3909
[5]   Quantitative structure-antitumor activity relationships of camptothecin analogues: Cluster analysis and genetic algorithm-based studies [J].
Fan, Y ;
Shi, LM ;
Kohn, KW ;
Pommier, Y ;
Weinstein, JN .
JOURNAL OF MEDICINAL CHEMISTRY, 2001, 44 (20) :3254-3263
[6]   ITERATIVE PARTIAL EQUALIZATION OF ORBITAL ELECTRONEGATIVITY - A RAPID ACCESS TO ATOMIC CHARGES [J].
GASTEIGER, J ;
MARSILI, M .
TETRAHEDRON, 1980, 36 (22) :3219-3228
[7]   Beware of q2! [J].
Golbraikh, A ;
Tropsha, A .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2002, 20 (04) :269-276
[8]   Farnesyl transferase inhibitors as anticancer agents [J].
Haluska, P ;
Dy, GK ;
Adjei, AA .
EUROPEAN JOURNAL OF CANCER, 2002, 38 (13) :1685-1700
[9]   Chem-bioinformatics and QSAR: A review of QSAR lacking positive hydrophobic terms [J].
Hansch, C ;
Kurup, A ;
Garg, R ;
Gao, H .
CHEMICAL REVIEWS, 2001, 101 (03) :619-672
[10]  
Hopfinger AJ, 1997, PRACTICAL APPL COMPU