Analysis of the antibody structure based on high-resolution crystallographic studies

被引:34
作者
Narciso, Jo Erika T. [1 ]
Uy, Iris Diana C. [1 ]
Cabang, April B. [1 ]
Chavez, Jenina Faye C. [1 ]
Pablo, Juan Lorenzo B. [1 ]
Padilla-Concepcion, Gisela P. [1 ]
Padlan, Eduardo A. [1 ]
机构
[1] Univ Philippines Diliman, Inst Marine Sci, Quezon City 1101, Philippines
关键词
SINGLE-DOMAIN ANTIBODY; ANGSTROM RESOLUTION; HUMAN-IMMUNOGLOBULIN; AFFINITY MATURATION; CRYSTAL-STRUCTURES; FAB FRAGMENT; HIV-1; GP120; BINDING; COMPLEX; ANTIGEN;
D O I
10.1016/j.nbt.2011.03.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
High-resolution structures of liganded and unliganded antibody molecules were analyzed in terms of the interaction between the antibody with ligand, between the residues in the contact between the variable domains, and between the framework and the complementarity-determining regions of the antibody. The solvent accessibilities of the residues in the variable domains were also analyzed. The structural information is useful in the engineering of antibodies for therapeutic and other purposes.
引用
收藏
页码:435 / 447
页数:13
相关论文
共 37 条
[1]   Light chain somatic mutations change thermodynamics of binding and water coordination in the HyHEL-10 family of antibodies [J].
Acchione, Mauro ;
Lipschultz, Claudia A. ;
DeSantis, Morgan E. ;
Shanmuganathan, Aranganathan ;
Li, Mi ;
Wlodawer, Alexander ;
Tarasov, Sergey ;
Smith-Gill, Sandra J. .
MOLECULAR IMMUNOLOGY, 2009, 47 (2-3) :457-464
[2]   Unusual Water-mediated Antigenic Recognition of the Proinflammatory Cytokine Interleukin-18 [J].
Argiriadi, Maria A. ;
Xiang, Tao ;
Wu, Chengbin ;
Ghayur, Tariq ;
Borhani, David W. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (36) :24478-24489
[3]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[4]   Crystal structures of the pro-inflammatory cytokine interleukin-23 and its complex with a high-affinity neutralizing antibody [J].
Beyer, Brian M. ;
Ingram, Richard ;
Ramanathan, Lata ;
Reichert, Paul ;
Le, Hung V. ;
Madison, Vincent ;
Orth, Peter .
JOURNAL OF MOLECULAR BIOLOGY, 2008, 382 (04) :942-955
[5]   SMALL REARRANGEMENTS IN STRUCTURES OF FV AND FAB FRAGMENTS OF ANTIBODY D1.3 ON ANTIGEN-BINDING [J].
BHAT, TN ;
BENTLEY, GA ;
FISCHMANN, TO ;
BOULOT, G ;
POLJAK, RJ .
NATURE, 1990, 347 (6292) :483-485
[6]   Water molecules in the antibody-antigen interface of the structure of the Fab HyHEL-5-lysozyme complex at 1.7 Å resolution:: comparison with results from isothermal titration calorimetry [J].
Cohen, GH ;
Silverton, EW ;
Padlan, EA ;
Dyda, F ;
Wibbenmeyer, JA ;
Willson, RC ;
Davies, DR .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2005, 61 :628-633
[7]   ANALYTICAL MOLECULAR-SURFACE CALCULATION [J].
CONNOLLY, ML .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1983, 16 (OCT) :548-558
[8]   Degenerate interfaces in antigen-antibody complexes [J].
Decanniere, K ;
Transue, TR ;
Desmyter, A ;
Maes, D ;
Muyldermans, S ;
Wyns, L .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 313 (03) :473-478
[9]   Three Camelid VHH domains in complex with porcine pancreatic α-amylase -: Inhibition and versatility of binding topology [J].
Desmyter, A ;
Spinelli, S ;
Payan, F ;
Lauwereys, M ;
Wyns, L ;
Muyldermans, S ;
Cambillau, C .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (26) :23645-23650
[10]   Antigen specificity and high affinity binding provided by one single loop of a camel single-domain antibody [J].
Desmyter, A ;
Decanniere, K ;
Muyldermans, S ;
Wyns, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (28) :26285-26290