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Coarse-grained models using local-density potentials optimized with the relative entropy: Application to implicit solvation
被引:85
|作者:
Sanyal, Tanmoy
[1
]
Shell, M. Scott
[1
]
机构:
[1] Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA
基金:
美国国家科学基金会;
关键词:
EMBEDDED-ATOM METHOD;
MOLECULAR-DYNAMICS;
HYDROPHOBIC INTERACTIONS;
ANTI-COOPERATIVITY;
PROTEIN-STRUCTURE;
PAIR POTENTIALS;
SOLVENT MODELS;
FORCE-FIELD;
WATER;
SIMULATION;
D O I:
10.1063/1.4958629
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
Bottom-up multiscale techniques are frequently used to develop coarse-grained (CG) models for simulations at extended length and time scales but are often limited by a compromise between computational efficiency and accuracy. The conventional approach to CG nonbonded interactions uses pair potentials which, while computationally efficient, can neglect the inherently multibody contributions of the local environment of a site to its energy, due to degrees of freedom that were coarse-grained out. This effect often causes the CG potential to depend strongly on the overall system density, composition, or other properties, which limits its transferability to states other than the one at which it was parameterized. Here, we propose to incorporate multibody effects into CG potentials through additional nonbonded terms, beyond pair interactions, that depend in a mean-field manner on local densities of different atomic species. This approach is analogous to embedded atom and bond-order models that seek to capture multibody electronic effects in metallic systems. We show that the relative entropy coarse-graining framework offers a systematic route to parameterizing such local density potentials. We then characterize this approach in the development of implicit solvation strategies for interactions between model hydrophobes in an aqueous environment. Published by AIP Publishing.
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页数:15
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