Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues

被引:85
作者
Birnbaum, Kenneth D. [1 ]
机构
[1] NYU, Ctr Genom & Syst Biol, New York, NY 10003 USA
来源
ANNUAL REVIEW OF GENETICS, VOL 52 | 2018年 / 52卷
基金
美国国家卫生研究院;
关键词
single-cell RNA-seq; trajectory analysis; rare cell types; pooled CRISPR; single-cell power analysis; CHROMATIN ACCESSIBILITY; SEQUENCING DATA; REVEALS; TRANSCRIPTOMICS; HETEROGENEITY; REGENERATION; COMMITMENT; INFERENCE; CIRCUITS; DYNAMICS;
D O I
10.1146/annurev-genet-120417-031247
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The growing scale and declining cost of single-cell RNA-sequencing (RNAseq) now permit a repetition of cell sampling that increases the power to detect rare cell states, reconstruct developmental trajectories, and measure phenotype in new terms such as cellular variance. The characterization of anatomy and developmental dynamics has not had an equivalent breakthrough since groundbreaking advances in live fluorescent microscopy. The new resolution obtained by single-cell RNA-seq is a boon to genetics because the novel description of phenotype offers the opportunity to refine gene function and dissect pleiotropy. In addition, the recent pairing of highthroughput genetic perturbation with single-cell RNA-seq has made practical a scale of genetic screening not previously possible.
引用
收藏
页码:203 / 221
页数:19
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