Database resources of the National Center for Biotechnology Information

被引：5

作者：

Sayers, Eric W. ^{[1
]}

Beck, Jeff ^{[1
]}

Brister, J. Rodney ^{[1
]}

Bolton, Evan E. ^{[1
]}

Canese, Kathi ^{[1
]}

Comeau, Donald C. ^{[1
]}

Funk, Kathryn ^{[1
]}

Ketter, Anne ^{[1
]}

Kim, Sunghwan ^{[1
]}

Kimchi, Avi ^{[1
]}

Kitts, Paul A. ^{[1
]}

Kuznetsov, Anatoliy ^{[1
]}

Lathrop, Stacy ^{[1
]}

Lu, Zhiyong ^{[1
]}

McGarvey, Kelly ^{[1
]}

Madden, Thomas L. ^{[1
]}

Murphy, Terence D. ^{[1
]}

O'Leary, Nuala ^{[1
]}

Phan, Lon ^{[1
]}

Schneider, Valerie A. ^{[1
]}

Thibaud-Nissen, Francoise ^{[1
]}

Trawick, Bart W. ^{[1
]}

Pruitt, Kim D. ^{[1
]}

Ostell, James ^{[1
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bldg 38A,8600 Rockville Pike, Bethesda, MD 20894 USA

来源：

NUCLEIC ACIDS RESEARCH | 2020年 / 48卷 / D1期

基金：

美国国家卫生研究院;

关键词：

MULTIPLE SEQUENCE ALIGNMENT;

D O I：

10.1093/nar/gkz899

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank (R) nucleic acid sequence database and the PubMed database of citations and abstracts published in life science journals. The Entrez system provides search and retrieval operations for most of these data from 35 distinct databases. The E-utilities serve as the programming interface for the Entrez system. Custom implementations of the BLAST program provide sequence-based searching of many specialized datasets. New resources released in the past year include a new PubMed interface, a sequence database search and a gene orthologs page. Additional resources that were updated in the past year include PMC, Bookshelf, My Bibliography, Assembly, RefSeq, viral genomes, the prokaryotic genome annotation pipeline, Genome Workbench, dbSNP, BLAST, Primer-BLAST, IgBLAST and PubChem.

引用

页码：D9 / D16

页数：8

共 25 条

[11] PUG-View: programmatic access to chemical annotations integrated in PubChem [J].

Kim, Sunghwan ;

Thiessen, Paul A. ;

Cheng, Tiejun ;

Zhang, Jian ;

Gindulyte, Asta ;

Bolton, Evan E. .

JOURNAL OF CHEMINFORMATICS, 2019, 11 (01)

[12] Getting the most out of PubChem for virtual screening [J].

Kim, Sunghwan .

EXPERT OPINION ON DRUG DISCOVERY, 2016, 11 (09) :843-855

[13] PubChem Substance and Compound databases [J].

Kim, Sunghwan ;

Thiessen, Paul A. ;

Bolton, Evan E. ;

Chen, Jie ;

Fu, Gang ;

Gindulyte, Asta ;

Han, Lianyi ;

He, Jane ;

He, Siqian ;

Shoemaker, Benjamin A. ;

Wang, Jiyao ;

Yu, Bo ;

Zhang, Jian ;

Bryant, Stephen H. .

NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D1202-D1213

[14] Assembly: a resource for assembled genomes at NCBI [J].

Kitts, Paul A. ;

Church, Deanna M. ;

Thibaud-Nissen, Francoise ;

Choi, Jinna ;

Hem, Vichet ;

Sapojnikov, Victor ;

Smith, Robert G. ;

Tatusova, Tatiana ;

Xiang, Charlie ;

Zherikov, Andrey ;

DiCuccio, Michael ;

Murphy, Terence D. ;

Pruitt, Kim D. ;

Kimchi, Avi .

NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D73-D80

[15] DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data [J].

Kodama, Yuichi ;

Mashima, Jun ;

Kosuge, Takehide ;

Ogasawara, Osamu .

NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D69-D73

[16] Kalign - an accurate and fast multiple sequence alignment algorithm [J].

Lassmann, T ;

Sonnhammer, ELL .

BMC BIOINFORMATICS, 2005, 6 (1)

[17] Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation [J].

O'Leary, Nuala A. ;

Wright, Mathew W. ;

Brister, J. Rodney ;

Ciufo, Stacy ;

McVeigh, Diana Haddad Rich ;

Rajput, Bhanu ;

Robbertse, Barbara ;

Smith-White, Brian ;

Ako-Adjei, Danso ;

Astashyn, Alexander ;

Badretdin, Azat ;

Bao, Yiming ;

Blinkova, Olga ;

Brover, Vyacheslav ;

Chetvernin, Vyacheslav ;

Choi, Jinna ;

Cox, Eric ;

Ermolaeva, Olga ;

Farrell, Catherine M. ;

Goldfarb, Tamara ;

Gupta, Tripti ;

Haft, Daniel ;

Hatcher, Eneida ;

Hlavina, Wratko ;

Joardar, Vinita S. ;

Kodali, Vamsi K. ;

Li, Wenjun ;

Maglott, Donna ;

Masterson, Patrick ;

McGarvey, Kelly M. ;

Murphy, Michael R. ;

O'Neill, Kathleen ;

Pujar, Shashikant ;

Rangwala, Sanjida H. ;

Rausch, Daniel ;

Riddick, Lillian D. ;

Schoch, Conrad ;

Shkeda, Andrei ;

Storz, Susan S. ;

Sun, Hanzhen ;

Thibaud-Nissen, Francoise ;

Tolstoy, Igor ;

Tully, Raymond E. ;

Vatsan, Anjana R. ;

Wallin, Craig ;

Webb, David ;

Wu, Wendy ;

Landrum, Melissa J. ;

Kimchi, Avi ;

Tatusova, Tatiana .

NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D733-D745

[18]

Sayers EW, 2020, NUCLEIC ACIDS RES, V48, pD84, DOI [10.1093/nar/gkaa1023, 10.1093/nar/gkz956, 10.1093/nar/gky989]

[19]

Sayers EW, 2019, NUCLEIC ACIDS RES, V47, pD23, DOI [10.1093/nar/gky1069, 10.1093/nar/gkr1184, 10.1093/nar/gks1189]

[20]

Schuler GD, 1996, METHOD ENZYMOL, V266, P141

← 1 2 3 →