Stretched and overwound DNA forms a Pauling-like structure with exposed bases

被引:284
作者
Allemand, JF
Bensimon, D
Lavery, R
Croquette, V
机构
[1] Univ Paris 06, Ecole Normale Super, Lab Phys Stat, URA D 1306 CNRS, F-75231 Paris 05, France
[2] Univ Paris 07, F-75231 Paris, France
[3] CNRS, Inst Biol Physicochim, Lab Biochim Theor, Unite Propre Rech 9080, F-75005 Paris, France
关键词
D O I
10.1073/pnas.95.24.14152
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We investigate structural transitions within a single stretched and supercoiled DNA molecule. With negative supercoiling, for a stretching force >0.3 pN, we observe the coexistence of B-DNA and denatured DNA from sigma approximate to -0.015 down to sigma = -1. Surprisingly, for positively supercoiled DNA (sigma > +0.037) stretched by 3 pN, we observe a similar coexistence of B-DNA and a new highly twisted structure. Experimental data and molecular modeling suggest that this structure has approximate to 2.62 bases per turn and an extension 75% larger than B-DNA. This structure has tightly interwound phosphate backbones and exposed bases in common with Pauling's early DNA structure [Pauling, L. & Corey, R. B. (1953), Proc. Natl. Acad. Sci. USA 39, 84-97] and an unusual structure proposed for the Pf1 bacteriophage
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页码:14152 / 14157
页数:6
相关论文
共 23 条
[1]  
Arora N, 1997, J COMPUT CHEM, V18, P1245, DOI 10.1002/(SICI)1096-987X(19970715)18:9<1245::AID-JCC12>3.0.CO
[2]  
2-4
[3]   ENTROPIC ELASTICITY OF LAMBDA-PHAGE DNA [J].
BUSTAMANTE, C ;
MARKO, JF ;
SIGGIA, ED ;
SMITH, S .
SCIENCE, 1994, 265 (5178) :1599-1600
[4]   DNA: An extensible molecule [J].
Cluzel, P ;
Lebrun, A ;
Heller, C ;
Lavery, R ;
Viovy, JL ;
Chatenay, D ;
Caron, F .
SCIENCE, 1996, 271 (5250) :792-794
[5]  
CLUZEL P, 1996, THESIS U P M CURIE P
[6]   STRUCTURE MODELS FOR DNA IN FILAMENTOUS VIRUSES WITH PHOSPHATES NEAR THE CENTER [J].
DAY, LA ;
WISEMAN, RL ;
MARZEC, CJ .
NUCLEIC ACIDS RESEARCH, 1979, 7 (06) :1393-1403
[7]   STABLE DNA UNWINDING, NOT BREATHING, ACCOUNTS FOR SINGLE-STRAND-SPECIFIC NUCLEASE HYPERSENSITIVITY OF SPECIFIC A+T-RICH SEQUENCES [J].
KOWALSKI, D ;
NATALE, DA ;
EDDY, MJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (24) :9464-9468
[8]   JUMNA (JUNCTION MINIMIZATION OF NUCLEIC-ACIDS) [J].
LAVERY, R ;
ZAKRZEWSKA, K ;
SKLENAR, H .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :135-158
[9]  
LAVERY R, 1994, ADV COMP BIOL, V1, P69
[10]   Modelling extreme stretching of DNA [J].
Lebrun, A ;
Lavery, R .
NUCLEIC ACIDS RESEARCH, 1996, 24 (12) :2260-2267