The network as the target

被引:8
作者
Baggs, Julie E. [1 ]
Hughes, Michael E. [1 ]
Hogenesch, John B. [1 ]
机构
[1] Univ Penn, Sch Med, Inst Translat Med & Therapeut, Philadelphia, PA 19104 USA
关键词
PROTEIN-PROTEIN INTERACTIONS; C-ELEGANS; SACCHAROMYCES-CEREVISIAE; INTERACTOME NETWORK; EARLY EMBRYOGENESIS; RNA INTERFERENCE; GENOME; MAP; YEAST; MOLECULES;
D O I
10.1002/wsbm.57
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
The conventional target centric model of drug discovery is pinned under the weight of prior success and the traditional problems of safety and efficacy for new molecules. An alternative to target centric drug development is to shift focus to the pathways that mediate both biology and pathophysiology. This method has the advantage of not requiring a priori knowledge of the small molecule target, but also comes with it several challenges including target determination. We suggest extending this notion more broadly across the drug discovery process using quantitative network structure-activity relationships (QNSAR), and discuss the steps necessary to test the hypothesis that systems biology approaches can be used to improve the drug discovery process. (C) 2009 John Wiley & Sons, Inc. WIREs Syst Biol Med 2010 2 127-133
引用
收藏
页码:127 / 133
页数:7
相关论文
共 30 条
[1]   Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening [J].
Aza-Blanc, P ;
Cooper, CL ;
Wagner, K ;
Batalov, S ;
Deveraux, QL ;
Cooke, MP .
MOLECULAR CELL, 2003, 12 (03) :627-637
[2]   RNA interference screening in Drosophila primary cells for genes involved in muscle assembly and maintenance [J].
Bai, Jianwu ;
Binari, Richard ;
Ni, Jian-Quan ;
Vijayakanthan, Marina ;
Li, Hong-Sheng ;
Perrimon, Norbert .
DEVELOPMENT, 2008, 135 (08) :1439-1449
[3]   Genome-wide RNAi analysis of growth and viability in Drosophila cells [J].
Boutros, M ;
Kiger, AA ;
Armknecht, S ;
Kerr, K ;
Hild, M ;
Koch, B ;
Haas, SA ;
Paro, R ;
Perrimon, N .
SCIENCE, 2004, 303 (5659) :832-835
[4]   A protein domain-based interactome network for C-elegans early embryogenesis [J].
Boxem, Mike ;
Maliga, Zoltan ;
Klitgord, Niels ;
Li, Na ;
Lemmens, Irma ;
Mana, Miyeko ;
de Lichtervelde, Lorenzo ;
Mul, Joram D. ;
van de Peut, Diederik ;
Devos, Maxime ;
Simonis, Nicolas ;
Yildirim, Muhammed A. ;
Cokol, Murat ;
Kao, Huey-Ling ;
de Smet, Anne-Sophie ;
Wang, Haidong ;
Schlaitz, Anne-Lore ;
Hao, Tong ;
Milstein, Stuart ;
Fan, Changyu ;
Tipsword, Mike ;
Drew, Kevin ;
Galli, Matilde ;
Rhrissorrakrai, Kahn ;
Drechsel, David ;
Koller, Daphne ;
Roth, Frederick P. ;
Iakoucheva, Lilia M. ;
Dunker, A. Keith ;
Bonneau, Richard ;
Gunsalus, Kristin C. ;
Hill, David E. ;
Piano, Fabio ;
Tavernier, Jan ;
van den Heuvel, Sander ;
Hyman, Anthony A. ;
Vidal, Marc .
CELL, 2008, 134 (03) :534-545
[5]   Genetical Genomics: Spotlight on QTL Hotspots [J].
Breitling, Rainer ;
Li, Yang ;
Tesson, Bruno M. ;
Fu, Jingyuan ;
Wu, Chunlei ;
Wiltshire, Tim ;
Gerrits, Alice ;
Bystrykh, Leonid V. ;
de Haan, Gerald ;
Su, Andrew I. ;
Jansen, Ritsert C. .
PLOS GENETICS, 2008, 4 (10)
[6]  
Burden Frank, 2008, V458, P25
[7]   Genome-scale functional profiling of the mammalian AP-1 signaling pathway [J].
Chanda, SK ;
White, S ;
Orth, AP ;
Reisdorph, R ;
Miraglia, L ;
Thomas, RS ;
DeJesus, P ;
Mason, DE ;
Huang, QH ;
Vega, R ;
Yu, DH ;
Nelson, CG ;
Smith, BM ;
Terry, R ;
Linford, AS ;
Yu, Y ;
Chirn, GW ;
Song, CZ ;
Labow, MA ;
Cohen, D ;
King, FJ ;
Peters, EC ;
Schultz, PG ;
Vogt, PK ;
Hogenesch, JB ;
Caldwell, JS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (21) :12153-12158
[8]   TORCs: Transducers of regulated CREB activity [J].
Conkright, MD ;
Canettieri, G ;
Screaton, R ;
Guzman, E ;
Miraglia, L ;
Hogenesch, JB ;
Montminy, M .
MOLECULAR CELL, 2003, 12 (02) :413-423
[9]   Pharmaceuticals - A new grammar for drug discovery [J].
Fishman, MC ;
Porter, JA .
NATURE, 2005, 437 (7058) :491-493
[10]   Functional genomic analysis of C-elegans chromosome I by systematic RNA interference [J].
Fraser, AG ;
Kamath, RS ;
Zipperlen, P ;
Martinez-Campos, M ;
Sohrmann, M ;
Ahringer, J .
NATURE, 2000, 408 (6810) :325-330