Performance of Group Testing Algorithms With Near-Constant Tests Per Item

被引:51
作者
Johnson, Oliver [1 ]
Aldridge, Matthew [2 ,3 ]
Scarlett, Jonathan [4 ,5 ]
机构
[1] Univ Bristol, Sch Math, Bristol BS8 1TW, Avon, England
[2] Univ Bath, Dept Math Sci, Bath BA2 7AY, Avon, England
[3] Heilbronn Inst Math Res, Bristol BS8 1SD, Avon, England
[4] Natl Univ Singapore, Dept Comp Sci, Singapore 117417, Singapore
[5] Natl Univ Singapore, Dept Math, Singapore 119076, Singapore
关键词
Algorithm design and analysis; group testing; measurement design; performance bounds; sparse models; DEFECTIVE MEMBERS; POPULATION; DESIGNS; POOLS;
D O I
10.1109/TIT.2018.2861772
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
We consider the nonadaptive group testing with N items, of which K = Theta (N-theta) are defective. We study a test design in which each item appears in nearly the same number of tests. For each item, we independently pick L tests uniformly at random with replacement and place the item in those tests. We analyze the performance of these designs with simple and practical decoding algorithms in a range of sparsity regimes and show that the performance is consistently improved in comparison with standard Bernoulli designs. We show that our new design requires roughly 23% fewer tests than a Bernoulli design when paired with the simple decoding algorithms known as combinatorial orthogonal matching pursuit and definite defectives (DD). This gives the best known nonadaptive group testing performance for theta > 0.43 and the best proven performance with a practical decoding algorithm for all theta is an element of(0, 1). We also give a converse result showing that the DD algorithm is optimal with respect to our randomized design when theta > 1/2. We complement our theoretical results with simulations that show a notable improvement over Bernoulli designs in both sparse and dense regimes.
引用
收藏
页码:707 / 723
页数:17
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