Identifying predictors of antimicrobial exposure in hospitalized patients using a machine learning approach
被引:13
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作者:
Chowdhury, A. S.
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机构:
Washington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USAWashington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
Chowdhury, A. S.
[1
]
Lofgren, E. T.
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机构:
Washington State Univ, Paul G Allen Sch Global Anim Hlth, Pullman, WA 99164 USA
Washington State Univ, Dept Math & Stat, Pullman, WA 99164 USAWashington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
Lofgren, E. T.
[2
,3
]
Moehring, R. W.
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机构:
Duke Univ, Sch Med, Dept Med, Durham, NC 27706 USAWashington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
Moehring, R. W.
[4
]
Broschat, S. L.
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机构:
Washington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
Washington State Univ, Paul G Allen Sch Global Anim Hlth, Pullman, WA 99164 USA
Washington State Univ, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USAWashington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
Broschat, S. L.
[1
,2
,5
]
机构:
[1] Washington State Univ, Sch Elect Engn & Comp Sci, POB 642752, Pullman, WA 99164 USA
[2] Washington State Univ, Paul G Allen Sch Global Anim Hlth, Pullman, WA 99164 USA
[3] Washington State Univ, Dept Math & Stat, Pullman, WA 99164 USA
[4] Duke Univ, Sch Med, Dept Med, Durham, NC 27706 USA
[5] Washington State Univ, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USA
Aims Analysis and tracking of antimicrobial utilization (AU) are crucial in antimicrobial stewardship efforts which are used to find effective interventions for controlling antimicrobial resistance. In antimicrobial stewardship, standard risk adjustment models are needed for benchmarking appropriate AU and for fair inter-facility comparison. In this study we identify patient- and facility-level predictors of antimicrobial usage in hospitalized patients using a machine learning approach, which can be used to inform a risk adjustment model to facilitate assessment of AU. To our knowledge, this is the first time machine learning has been applied for this purpose. Methods and Results Patient admission records were retrieved from the Duke Antimicrobial Stewardship Outreach Network which include clinical data for 27 community hospitals in the southeastern United States. Candidate features (predictors) were then generated from these records. The number of features was reduced using a statistical approach, and missing values of the reduced feature set were imputed using bootstrapping and expectation-maximization algorithm. Finally, support vector regression (SVR) and cubist regression (CB) models were applied to find root-mean-square error values which were used to evaluate the selected feature set. The performance of the SVR and CB models was found to be better than that of linear null and negative binomial null models, thereby demonstrating the effectiveness of our selected features. Conclusions Relevant patient- and facility-level predictors of antimicrobial usage in days of therapy were obtained and evaluated. The potential predictor set can be used in risk adjustment strategies for benchmarking antimicrobial use. Significance and Impact of the Study One reason for the rapid emergence of antimicrobial resistance is inappropriate use of antibiotics in hospitalized patients. Identifying predictors of antimicrobial exposure using a machine learning technique can improve the use of AU, enhance patient health outcomes, and reduce the infection spread caused by antimicrobial-resistant organisms.
机构:
Fdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, ItalyFdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
Cazzolli, Carlotta
Chierici, Marco
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Fdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, ItalyFdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
Chierici, Marco
Dallabona, Monica
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机构:
Azienda Provinciale Servizi Sanitari, Dipartimento Transmurale Salute Mentale, Unita Operativa Psicol, Viale Verona, I-38123 Trento, ItalyFdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
Dallabona, Monica
Guella, Chiara
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机构:
Azienda Provinciale Servizi Sanitari, Dipartimento Transmurale Salute Mentale, Unita Operativa Psicol, Viale Verona, I-38123 Trento, ItalyFdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
Guella, Chiara
Jurman, Giuseppe
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机构:
Fdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
Human Univ, Dept Biomed Sci, I-20072 Milan, ItalyFdn Bruno Kessler, Data Sci Hlth, Via Sommar 18, I-38123 Trento, Italy
机构:
China Natl Tobacco Corp, Beijing 100045, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Wu, Shuo
Zhang, Xiaomei
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机构:
Univ Int Business & Econ, Sch Stat, Beijing 100029, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Zhang, Xiaomei
Chen, Pianzhou
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机构:
Peking Univ, Sch New Media, Beijing 100091, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Chen, Pianzhou
Lai, Heng
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机构:
Univ Int Business & Econ, Sch Stat, Beijing 100029, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Lai, Heng
Wu, Yingchun
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机构:
Univ Int Business & Econ, Sch Stat, Beijing 100029, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Wu, Yingchun
Shia, Ben-Chang
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机构:
Fu Jen Catholic Univ, Grad Inst Business Adm, Coll Management, New Taipei 24205, Taiwan
Fu Jen Catholic Univ, Artificial Intelligence Dev Ctr, New Taipei 24205, TaiwanChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Shia, Ben-Chang
Chen, Ming-Chih
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Fu Jen Catholic Univ, Grad Inst Business Adm, Coll Management, New Taipei 24205, Taiwan
Fu Jen Catholic Univ, Artificial Intelligence Dev Ctr, New Taipei 24205, TaiwanChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Chen, Ming-Chih
Ye, Linglong
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Xiamen Univ, Sch Publ Affairs, Xiamen 361005, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
Ye, Linglong
Qin, Lei
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机构:
Univ Int Business & Econ, Sch Stat, Beijing 100029, Peoples R China
Wuhan Univ, Dong Fureng Inst Econ & Social Dev, Wuhan 430072, Peoples R ChinaChina Natl Tobacco Corp, Beijing 100045, Peoples R China
机构:
University of Zabol,Department of Environment, Faculty of Natural ResourcesUniversity of Zabol,Department of Environment, Faculty of Natural Resources
Narjes Okati
Zohre Ebrahimi-Khusfi
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University of Jiroft,Department of Environmental Science and Engineering, Faculty of Natural ResourcesUniversity of Zabol,Department of Environment, Faculty of Natural Resources
Zohre Ebrahimi-Khusfi
Samira Zandifar
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Research Institute of Forests and Rangeland,Desert Research DivisionUniversity of Zabol,Department of Environment, Faculty of Natural Resources
Samira Zandifar
Ruhollah Taghizadeh-Mehrjardi
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机构:
Agricultural Research,Faculty of Agriculture and Natural ResourcesUniversity of Zabol,Department of Environment, Faculty of Natural Resources
机构:
Univ Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Schell, Robert C.
Allen, Bennett
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NYU, Ctr Opioid Epidemiol & Policy, Grossman Sch Med, Dept Populat Hlth, New York, NY USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Allen, Bennett
Goedel, William C.
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Brown Univ, Sch Publ Hlth, Dept Epidemiol, Providence, RI 02912 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Goedel, William C.
Hallowell, Benjamin D.
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Rhode Isl Dept Hlth, Ctr Hlth Data & Anal, Providence, RI 02908 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Hallowell, Benjamin D.
Scagos, Rachel
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Rhode Isl Dept Hlth, Ctr Hlth Data & Anal, Providence, RI 02908 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Scagos, Rachel
Li, Yu
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Brown Univ, Sch Publ Hlth, Dept Epidemiol, Providence, RI 02912 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Li, Yu
Krieger, Maxwell S.
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Brown Univ, Sch Publ Hlth, Dept Epidemiol, Providence, RI 02912 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Krieger, Maxwell S.
Neill, Daniel B.
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NYU, Ctr Urban Sci & Progress, New York, NY USA
NYU, Courant Inst Math Sci, Dept Comp Sci, New York, NY USA
NYU, Robert F Wagner Grad Sch Publ Serv, New York, NY 10003 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Neill, Daniel B.
Marshall, Brandon D. L.
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Brown Univ, Sch Publ Hlth, Dept Epidemiol, Providence, RI 02912 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Marshall, Brandon D. L.
Cerda, Magdalena
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机构:
NYU, Ctr Opioid Epidemiol & Policy, Grossman Sch Med, Dept Populat Hlth, New York, NY USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA
Cerda, Magdalena
Ahern, Jennifer
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Univ Calif Berkeley, Sch Publ Hlth, Div Epidemiol, Berkeley, CA 94704 USAUniv Calif Berkeley, Sch Publ Hlth, Div Hlth Policy & Management, Berkeley Way West,2121 Berkeley Way,5th Floor, Berkeley, CA 94704 USA