On the release of cppxfel for processing X-ray free-electron laser images

被引:25
|
作者
Ginn, Helen Mary [1 ]
Evans, Gwyndaf [2 ]
Sauter, Nicholas K. [3 ]
Stuart, David Ian [1 ,2 ]
机构
[1] Wellcome Trust Ctr Human Genet, Div Struct Biol, Roosevelt Dr, Oxford OX3 7BN, Oxon, England
[2] Diamond House,Harwell Sci & Innovat Campus, Didcot OX11 QX, Oxon, England
[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, 1 Cyclotron Rd, Berkeley, CA 94720 USA
基金
英国医学研究理事会; 英国惠康基金;
关键词
X-ray free-electron lasers; XFELS; serial femtosecond crystallography; data analysis; computer programs; CRYSTALLOGRAPHIC DATA; POST-REFINEMENT; PHOTOSYSTEM-II; FEMTOSECOND; DIFFRACTION; MODEL;
D O I
10.1107/S1600576716006981
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images.
引用
收藏
页码:1065 / 1072
页数:8
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