Ewald sum corrections in simulations of ion and dipole solvation and electron transfer

被引:4
作者
Matyushov, Dmitry V. [1 ,2 ]
机构
[1] Arizona State Univ, Sch Mol Sci, POB 871504, Tempe, AZ 85287 USA
[2] Arizona State Univ, Dept Phys, POB 871504, Tempe, AZ 85287 USA
基金
美国国家科学基金会;
关键词
FINITE-SIZE CORRECTIONS; FREE-ENERGY; COMPUTER-SIMULATIONS; POLAR-SOLVENTS; REORGANIZATION; FIELDS; DYNAMICS; SYSTEMS;
D O I
10.1063/5.0061644
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Periodic boundary conditions and Ewald sums used in standard simulation protocols require finite-size corrections when the total charge of the simulated system is nonzero. Corrections for ion solvation were introduced by Hummer, Pratt, and Garcia, [J. Chem. Phys. 107, 9275 (1997)]. The latter approach is extended here to derive finite-size correction for the Stokes-shift and reorganization energy applied to electron-transfer reactions. The same correction term, scaling inversely with the box size, adds to the reorganization energy from the energy-gap variance but is subtracted from the reorganization energy calculated from the Stokes shift. Finite-size corrections thus widen the gap between these two quantities, which were recently found to diverge for protein electron transfer. Corrections to the free energy of dipole solvation and the variance of the electric field scale as m(2)/L-3 with the solute dipole m and the box size L.
引用
收藏
页数:8
相关论文
共 48 条
[1]  
Abramowitz M., 1970, Handbook of Mathematical Functions
[2]  
Allen M.P., 1996, Computer Simulation of Liquids
[3]  
[Anonymous], 1989, Electrical Properties of Biopolymers and Membranes
[4]  
[Anonymous], 1978, Dielectric Behaviour of Biological Molecules in Solution
[5]   A classical point charge model study of system size dependence of oxidation and reorganization free energies in aqueous solution [J].
Ayala, Regla ;
Sprik, Michiel .
JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (02) :257-269
[6]   Vibrational Spectroscopy as a Probe of Structure and Dynamics in Liquid Water [J].
Bakker, H. J. ;
Skinner, J. L. .
CHEMICAL REVIEWS, 2010, 110 (03) :1498-1517
[7]   Long-Range Modulations of Electric Fields in Proteins [J].
Biava, Hernan ;
Schreiber, Toni ;
Katz, Sagie ;
Voeiler, Jan-Stefan ;
Stolarski, Michael ;
Schulz, Claudia ;
Michael, Norbert ;
Budisa, Nediljko ;
Kozuch, Jacek ;
Utesch, Tillmann ;
Hildebrandt, Peter .
JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (35) :8330-8342
[8]   Quantum versus classical electron transfer energy as reaction coordinate for the aqueous Ru2+/Ru3+ redox reaction [J].
Blumberger, J ;
Sprik, M .
THEORETICAL CHEMISTRY ACCOUNTS, 2006, 115 (2-3) :113-126
[9]   Recent Advances in the Theory and Molecular Simulation of Biological Electron Transfer Reactions [J].
Blumberger, Jochen .
CHEMICAL REVIEWS, 2015, 115 (20) :11191-11238
[10]  
Bottcher C. J. F., 1973, THEORY ELECT POLARIZ, V1