Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach

被引:9
作者
Segota, Sandi Baressi [1 ]
Lorencin, Ivan [1 ]
Smolic, Klara [2 ]
Andelic, Nikola [1 ]
Markic, Dean [2 ,3 ]
Mrzljak, Vedran [1 ]
Stifanic, Daniel [1 ]
Musulin, Jelena [1 ]
Spanjol, Josip [2 ,3 ]
Car, Zlatan [1 ]
机构
[1] Univ Rijeka, Fac Engn, Vukovarska 58, Rijeka 51000, Croatia
[2] Clin Hosp Ctr Rijeka, Kresimirova 42, Rijeka 51000, Croatia
[3] Fac Med, Branchetta 20-1, Rijeka 51000, Croatia
来源
BIOLOGY-BASEL | 2021年 / 10卷 / 11期
关键词
artificial intelligence; computer tomography; machine learning; semantic segmentation; urinary bladder cancer; RISK-FACTORS; UNET; CARCINOMA;
D O I
10.3390/biology10111134
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Simple Summary: Bladder cancer is a common cancer of the urinary tract, characterized by high metastatic potential and recurrence. The research applies a transfer learning approach on CT images (frontal, axial, and saggital axes) for the purpose of semantic segmentation of areas affected by bladder cancer. A system consisting of AlexNet network for plane recognition, using transfer learning-based U-net networks for the segmentation task. Achieved results show that the proposed system has a high performance, suggesting possible use in clinical practice. Abstract: Urinary bladder cancer is one of the most common cancers of the urinary tract. This cancer is characterized by its high metastatic potential and recurrence rate. Due to the high metastatic potential and recurrence rate, correct and timely diagnosis is crucial for successful treatment and care. With the aim of increasing diagnosis accuracy, artificial intelligence algorithms are introduced to clinical decision making and diagnostics. One of the standard procedures for bladder cancer diagnosis is computer tomography (CT) scanning. In this research, a transfer learning approach to the semantic segmentation of urinary bladder cancer masses from CT images is presented. The initial data set is divided into three sub-sets according to image planes: frontal (4413 images), axial (4993 images), and sagittal (996 images). First, AlexNet is utilized for the design of a plane recognition system, and it achieved high classification and generalization performances with an (AUC(micro)) over bar of 0.9999 and sigma(AUC(micro)) of 0.0006. Furthermore, by applying the transfer learning approach, significant improvements in both semantic segmentation and generalization performances were achieved. For the case of the frontal plane, the highest performances were achieved if pre-trained ResNet101 architecture was used as a backbone for U-net with (DSC) over bar up to 0.9587 and sigma(DSC) of 0.0059. When U-net was used for the semantic segmentation of urinary bladder cancer masses from images in the axial plane, the best results were achieved if pre-trained ResNet50 was used as a backbone, with a DSC up to 0.9372 and sigma(DSC) of 0.0147. Finally, in the case of images in the sagittal plane, the highest results were achieved with VGG-16 as a backbone. In this case, (DSC) over bar values up to 0.9660 with a sigma(DSC) of 0.0486 were achieved. From the listed results, the proposed semantic segmentation system worked with high performance both from the semantic segmentation and generalization standpoints. The presented results indicate that there is the possibility for the utilization of the semantic segmentation system in clinical practice.
引用
收藏
页数:25
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共 59 条
[31]   Edge detection algorithm of cancer image based on deep learning [J].
Li, Xiaofeng ;
Jiao, Hongshuang ;
Wang, Yanwei .
BIOENGINEERED, 2020, 11 (01) :693-707
[32]   H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation From CT Volumes [J].
Li, Xiaomeng ;
Chen, Hao ;
Qi, Xiaojuan ;
Dou, Qi ;
Fu, Chi-Wing ;
Heng, Pheng-Ann .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2018, 37 (12) :2663-2674
[33]   Computer-aided breast cancer diagnosis based on image segmentation and interval analysis [J].
Liu, Qing ;
Liu, Zhigang ;
Yong, Shenghui ;
Jia, Kun ;
Razmjooy, Navid .
AUTOMATIKA, 2020, 61 (03) :496-506
[34]   On Urinary Bladder Cancer Diagnosis: Utilization of Deep Convolutional Generative Adversarial Networks for Data Augmentation [J].
Lorencin, Ivan ;
Baressi Segota, Sandi ;
Andelic, Nikola ;
Mrzljak, Vedran ;
Cabov, Tomislav ;
Spanjol, Josip ;
Car, Zlatan .
BIOLOGY-BASEL, 2021, 10 (03) :1-27
[35]   Automatic Evaluation of the Lung Condition of COVID-19 Patients Using X-ray Images and Convolutional Neural Networks [J].
Lorencin, Ivan ;
Baressi Segota, Sandi ;
Andelic, Nikola ;
Blagojevic, Andela ;
Sustersic, Tijana ;
Protic, Alen ;
Arsenijevic, Milos ;
Cabov, Tomislav ;
Filipovic, Nenad ;
Car, Zlatan .
JOURNAL OF PERSONALIZED MEDICINE, 2021, 11 (01) :1-31
[36]   Using multi-layer perceptron with Laplacian edge detector for bladder cancer diagnosis [J].
Lorencin, Ivan ;
Andelic, Nikola ;
Spanjol, Josip ;
Car, Zlatan .
ARTIFICIAL INTELLIGENCE IN MEDICINE, 2020, 102
[37]   Lung nodules detection using semantic segmentation and classification with optimal features [J].
Meraj, Talha ;
Raul, Hafiz Tayyab ;
Zahoor, Saliha ;
Hassan, Arslan ;
Lali, M. IkramUllah ;
Ali, Liaqat ;
Bukhari, Syed Ahmad Chan ;
Shoaib, Umar .
NEURAL COMPUTING & APPLICATIONS, 2021, 33 (17) :10737-10750
[38]   Multiclass semantic segmentation and quantification of traumatic brain injury lesions on head CT using deep learning: an algorithm development and multicentre validation study [J].
Monteiro, Miguel ;
Newcombe, Virginia F. J. ;
Mathieu, Francois ;
Adatia, Krishma ;
Kamnitsas, Konstantinos ;
Ferrante, Enzo ;
Das, Tilak ;
Whitehouse, Daniel ;
Rueckert, Daniel ;
Menon, David K. ;
Glocker, Ben .
LANCET DIGITAL HEALTH, 2020, 2 (06) :E314-E322
[39]   Self-supervision with Superpixels: Training Few-Shot Medical Image Segmentation Without Annotation [J].
Ouyang, Cheng ;
Biffi, Carlo ;
Chen, Chen ;
Kart, Turkay ;
Qiu, Huaqi ;
Rueckert, Daniel .
COMPUTER VISION - ECCV 2020, PT XXIX, 2020, 12374 :762-780
[40]   Analysis of Segmentation and Modeling of Lung Cancer Images Scanned Continuously by Computed Tomography Based on Materiaise's Interactive Medical Image Control System [J].
Pan, Hongtao ;
Dong, Mo ;
Zhao, Xiangkun ;
Zhou, Zhizun ;
Zhou, Hongsuo .
JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS, 2020, 10 (04) :873-876