Identification of key pathways and metabolic fingerprints of longevity in C. elegans

被引:49
作者
Gao, Arwen W. [1 ]
Smith, Reuben L. [1 ]
van Weeghel, Michel [1 ]
Kamble, Rashmi [1 ]
Janssens, Georges E. [1 ]
Houtkooper, Riekelt H. [1 ]
机构
[1] Univ Amsterdam, Lab Genet Metab Dis, Amsterdam Gastroenterol & Metab, Amsterdam UMC, NL-1105 AZ Amsterdam, Netherlands
关键词
C; elegans; Caloric restriction; Insulin/IGF-1; signaling; Transcriptomics; Metabolomics; Longevity; RESTRICTION-INDUCED LONGEVITY; DIETARY RESTRICTION; LIFE-SPAN; LONG-LIFE; SIGNATURE; PROTEIN; GENETICS; REVEALS; DAF-16; MUTANT;
D O I
10.1016/j.exger.2018.10.003
中图分类号
R592 [老年病学]; C [社会科学总论];
学科分类号
03 ; 0303 ; 100203 ;
摘要
Impaired insulin/IGF-1 signaling (IIS) and caloric restriction (CR) prolong lifespan in the nematode C. elegans. However, a cross comparison of these longevity pathways using a multi-omics integration approach is lacking. In this study, we aimed to identify key pathways and metabolite fingerprints of longevity that are shared between IIS and CR worm models using multi-omics integration. We generated transcriptomics and metabolomics data from long-lived worm strains, i.e. daf-2 (impaired IIS) and eat-2 (CR model) and compared them with the wildtype strain N2. Transcriptional profiling identified shared longevity signatures, such as an upregulation of lipid storage and defense responses, and downregulation of macromolecule synthesis and developmental processes. Metabolomics profiling identified an increase in the levels of glycerol-3P, adenine, xanthine, and AMP, and a decrease in the levels of the amino acid pool, as well as the C18: 0, C17: 1, C19: 1, C20: 0 and C22: 0 fatty acids. After we integrated transcriptomics and metabolomics data based on the annotations in KEGG, our results highlighted increased amino acid metabolism and an upregulation of purine metabolism as a commonality between the two long-lived mutants. Overall, our findings point towards the existence of shared metabolic pathways that are likely important for lifespan extension and provide novel insights into potential regulators and metabolic fingerprints for longevity.
引用
收藏
页码:128 / 140
页数:13
相关论文
共 46 条
[1]   Ethanol Metabolism and Osmolarity Modify Behavioral Responses to Ethanol in C. elegans [J].
Alaimo, Joseph T. ;
Davis, Scott J. ;
Song, Sam S. ;
Burnette, Christopher R. ;
Grotewiel, Mike ;
Shelton, Keith L. ;
Pierce-Shimomura, Jonathan T. ;
Davies, Andrew G. ;
Bettinger, Jill C. .
ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH, 2012, 36 (11) :1840-1850
[2]  
Benjamini Y, 2001, ANN STAT, V29, P1165
[3]   A comparison of normalization methods for high density oligonucleotide array data based on variance and bias [J].
Bolstad, BM ;
Irizarry, RA ;
Åstrand, M ;
Speed, TP .
BIOINFORMATICS, 2003, 19 (02) :185-193
[4]   A metabolic signature for long life in the Caenorhabditis elegans Mit mutants [J].
Butler, Jeffrey A. ;
Mishur, Robert J. ;
Bhaskaran, Shylesh ;
Rea, Shane L. .
AGING CELL, 2013, 12 (01) :130-138
[5]   The Complex Genetic Architecture of the Metabolome [J].
Chan, Eva K. F. ;
Rowe, Heather C. ;
Hansen, Bjarne G. ;
Kliebenstein, Daniel J. .
PLOS GENETICS, 2010, 6 (11)
[6]   Distinct metabolomic signatures are associated with longevity in humans [J].
Cheng, Susan ;
Larson, Martin G. ;
McCabe, Elizabeth L. ;
Murabito, Joanne M. ;
Rhee, Eugene P. ;
Ho, Jennifer E. ;
Jacques, Paul F. ;
Ghorbani, Anahita ;
Magnusson, Martin ;
Souza, Amanda L. ;
Deik, Amy A. ;
Pierce, Kerry A. ;
Bullock, Kevin ;
O'Donnell, Christopher J. ;
Melander, Olle ;
Clish, Clary B. ;
Vasan, Ramachandran S. ;
Gerszten, Robert E. ;
Wang, Thomas J. .
NATURE COMMUNICATIONS, 2015, 6
[7]   LC-MS Proteomics Analysis of the Insulin/IGF-1-Deficient Caenorhabditis elegans daf-2(e1370) Mutant Reveals Extensive Restructuring of Intermediary Metabolism [J].
Depuydt, Geert ;
Xie, Fang ;
Petyuk, Vladislav A. ;
Smolders, Arne ;
Brewer, Heather M. ;
Camp, David G., II ;
Smith, Richard D. ;
Braeckman, Bart P. .
JOURNAL OF PROTEOME RESEARCH, 2014, 13 (04) :1938-1956
[8]   Quantitative mass spectrometry identifies insulin signaling targets in C-elegans [J].
Dong, Meng-Qiu ;
Venable, John D. ;
Au, Nora ;
Xu, Tao ;
Park, Sung Kyu ;
Cociorva, Daniel ;
Johnson, Jeffrey R. ;
Dillin, Andrew ;
Yates, John R., III .
SCIENCE, 2007, 317 (5838) :660-663
[9]  
Elle Ida Coordt, 2012, Worm, V1, P26, DOI 10.4161/worm.19564
[10]   A Long Noncoding RNA on the Ribosome Is Required for Lifespan Extension [J].
Essers, Paul B. ;
Nonnekens, Julie ;
Goos, Yvonne J. ;
Betist, Marco C. ;
Viester, Marjon D. ;
Mossink, Britt ;
Lansu, Nico ;
Korswagen, Hendrik C. ;
Jelier, Rob ;
Brenkman, Arjan B. ;
MacInnes, Alyson W. .
CELL REPORTS, 2015, 10 (03) :339-345