Prospective role and immunotherapeutic targets of sideroflexin protein family in lung adenocarcinoma: evidence from bioinformatics validation

被引:47
作者
Dang, Huy Hoang [1 ]
Ta, Hoang Dang Khoa [2 ,3 ,4 ]
Nguyen, Truc T. T. [5 ,6 ]
Anuraga, Gangga [2 ,3 ,4 ,7 ]
Wang, Chih-Yang [2 ,3 ,4 ]
Lee, Kuen-Haur [2 ,3 ,4 ,8 ]
Nguyen Quoc Khanh Le [9 ,10 ,11 ]
机构
[1] Taipei Med Univ, Coll Med, Int PhD Program Cell Therapy & Regenerat Med, Taipei 11031, Taiwan
[2] Taipei Med Univ, Coll Med Sci & Technol, PhD Program Canc Mol Biol & Drug Discovery, Taipei 11031, Taiwan
[3] Acad Sinica, Taipei 11031, Taiwan
[4] Taipei Med Univ, Coll Med Sci & Technol, Grad Inst Canc Biol & Drug Discovery, Taipei 11031, Taiwan
[5] Taipei Med Univ, Grad Inst Biomed Informat, Translat Med Div, Taipei 110, Taiwan
[6] Hosp 30 4, Memory & Dementia Unit, Ho Chi Minh City 70000, Vietnam
[7] Univ PGRI Adi Buana, Fac Sci & Technol, Dept Stat, Surabaya 60234, East Java, Indonesia
[8] Taipei Med Univ, Wan Fang Hosp, Canc Ctr, Taipei 11031, Taiwan
[9] Taipei Med Univ, Coll Med, Profess Master Program Artificial Intelligence Me, Taipei 106, Taiwan
[10] Taipei Med Univ, Res Ctr Artificial Intelligence Med, Taipei 106, Taiwan
[11] Taipei Med Univ Hosp, Translat Imaging Res Ctr, Taipei 110, Taiwan
关键词
Immune therapeutics; Lung adenocarcinoma; Sideroflexin; SFXN; SLC56A; Bioinformatics analysis; GENE-EXPRESSION; WEB SERVER; CANCER; IRON; IDENTIFICATION; ENCYCLOPEDIA; ONTOLOGY; SURVIVAL;
D O I
10.1007/s10142-022-00883-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
As lung cancer remains the leading cause of cancer deaths globally, characterizing the tumor molecular profiles is crucial to tailoring treatments for individuals at advanced stages. Cancer cells exhibit strong dependence on iron for their proliferation, and several iron-regulatory proteins have been proposed as either oncogenes or tumor suppressive genes. This study aims to evaluate the prospective therapeutic and prognostic values of the sideroflexin (SFXN) gene family, whose functions involve mitochondrial iron metabolism, in lung adenocarcinoma (LUAD). Differential expression analysis using TIMER and UALCAN tools was first employed to compare SFXNs expression levels between normal and LUAD tissues. Next, SFXNs' prognostic values, biological significance, and potential as immunotherapy candidates were examined from GEPIA, cBio-Portal, MetaCore, Cytoscape, and TIMER databases. It was found that all members of SFXN family, except SFXN3, were differentially expressed in LUAD compared to normal samples and within different stages of LUAD. Survival analysis then revealed SFXN1 to be related to worse overall survival outcome in patients with LUAD. Furthermore, several correlations between expression of SFXN1 and immune infiltration cells were discovered. To conclude, our study provides evidence of SFXN family gene's relevance to the prognosis and immunotherapeutic targets of LUAD.
引用
收藏
页码:1057 / 1072
页数:16
相关论文
共 52 条
[31]  
LIM SM, 2020, IMMUNE NETW, V20
[32]   The human sideroflexin 5 (SFXN5) gene:: sequence, expression analysis and exclusion as a candidate for PARK3 [J].
Lockhart, PJ ;
Holtom, B ;
Lincoln, S ;
Hussey, J ;
Zimprich, A ;
Gasser, T ;
Wszolek, ZK ;
Hardy, J ;
Farrer, MJ .
GENE, 2002, 285 (1-2) :229-237
[33]   Upregulation of TRIP13 promotes the malignant progression of lung cancer via the EMT pathway [J].
Lu, Rujian ;
Zhou, Qian ;
Ju, Linling ;
Chen, Lin ;
Wang, Feng ;
Shao, Jianguo .
ONCOLOGY REPORTS, 2021, 46 (02)
[34]   Iron and cancer: recent insights [J].
Manz, David H. ;
Blanchette, Nicole L. ;
Paul, Bibbin T. ;
Torti, Frank M. ;
Torti, Suzy V. .
COOLEY'S ANEMIA, 2016, 1368 :149-161
[35]   Identification and characterization of a novel mitochondrial tricarboxylate carrier [J].
Miyake, S ;
Yamashita, T ;
Taniguchi, M ;
Tamatani, M ;
Sato, K ;
Tohyama, M .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2002, 295 (02) :463-468
[36]   Regulation of mitochondrial iron homeostasis by sideroflexin 2 [J].
Mon, Ei Ei ;
Wei, Fan-Yan ;
Ahmad, Raja Norazireen Raja ;
Yamamoto, Takahiro ;
Moroishi, Toshiro ;
Tomizawa, Kazuhito .
JOURNAL OF PHYSIOLOGICAL SCIENCES, 2019, 69 (02) :359-373
[37]   Serum autoantibody to sideroflexin 3 as a novel tumor marker for oral squamous cell carcinoma [J].
Murase, Ryuichi ;
Abe, Yasuhito ;
Takeuchi, Takashi ;
Nabeta, Motowo ;
Imai, Yoshinori ;
Kamei, Yoshiaki ;
Kagawa-Miki, Lisa ;
Ueda, Norifumi ;
Sumida, Tomoki ;
Hamakawa, Hiroyuki ;
Kito, Katusmi .
PROTEOMICS CLINICAL APPLICATIONS, 2008, 2 (04) :517-527
[38]   Sideroflexin 4 affects Fe-S cluster biogenesis, iron metabolism, mitochondrial respiration and heme biosynthetic enzymes [J].
Paul, Bibbin T. ;
Tesfay, Lia ;
Winkler, C. R. ;
Torti, Frank M. ;
Torti, Suzy, V .
SCIENTIFIC REPORTS, 2019, 9 (1)
[39]   Cytoscape: A software environment for integrated models of biomolecular interaction networks [J].
Shannon, P ;
Markiel, A ;
Ozier, O ;
Baliga, NS ;
Wang, JT ;
Ramage, D ;
Amin, N ;
Schwikowski, B ;
Ideker, T .
GENOME RESEARCH, 2003, 13 (11) :2498-2504
[40]   Cancer Statistics, 2021 [J].
Siegel, Rebecca L. ;
Miller, Kimberly D. ;
Fuchs, Hannah E. ;
Jemal, Ahmedin .
CA-A CANCER JOURNAL FOR CLINICIANS, 2021, 71 (01) :7-33