Prospective role and immunotherapeutic targets of sideroflexin protein family in lung adenocarcinoma: evidence from bioinformatics validation

被引:47
作者
Dang, Huy Hoang [1 ]
Ta, Hoang Dang Khoa [2 ,3 ,4 ]
Nguyen, Truc T. T. [5 ,6 ]
Anuraga, Gangga [2 ,3 ,4 ,7 ]
Wang, Chih-Yang [2 ,3 ,4 ]
Lee, Kuen-Haur [2 ,3 ,4 ,8 ]
Nguyen Quoc Khanh Le [9 ,10 ,11 ]
机构
[1] Taipei Med Univ, Coll Med, Int PhD Program Cell Therapy & Regenerat Med, Taipei 11031, Taiwan
[2] Taipei Med Univ, Coll Med Sci & Technol, PhD Program Canc Mol Biol & Drug Discovery, Taipei 11031, Taiwan
[3] Acad Sinica, Taipei 11031, Taiwan
[4] Taipei Med Univ, Coll Med Sci & Technol, Grad Inst Canc Biol & Drug Discovery, Taipei 11031, Taiwan
[5] Taipei Med Univ, Grad Inst Biomed Informat, Translat Med Div, Taipei 110, Taiwan
[6] Hosp 30 4, Memory & Dementia Unit, Ho Chi Minh City 70000, Vietnam
[7] Univ PGRI Adi Buana, Fac Sci & Technol, Dept Stat, Surabaya 60234, East Java, Indonesia
[8] Taipei Med Univ, Wan Fang Hosp, Canc Ctr, Taipei 11031, Taiwan
[9] Taipei Med Univ, Coll Med, Profess Master Program Artificial Intelligence Me, Taipei 106, Taiwan
[10] Taipei Med Univ, Res Ctr Artificial Intelligence Med, Taipei 106, Taiwan
[11] Taipei Med Univ Hosp, Translat Imaging Res Ctr, Taipei 110, Taiwan
关键词
Immune therapeutics; Lung adenocarcinoma; Sideroflexin; SFXN; SLC56A; Bioinformatics analysis; GENE-EXPRESSION; WEB SERVER; CANCER; IRON; IDENTIFICATION; ENCYCLOPEDIA; ONTOLOGY; SURVIVAL;
D O I
10.1007/s10142-022-00883-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
As lung cancer remains the leading cause of cancer deaths globally, characterizing the tumor molecular profiles is crucial to tailoring treatments for individuals at advanced stages. Cancer cells exhibit strong dependence on iron for their proliferation, and several iron-regulatory proteins have been proposed as either oncogenes or tumor suppressive genes. This study aims to evaluate the prospective therapeutic and prognostic values of the sideroflexin (SFXN) gene family, whose functions involve mitochondrial iron metabolism, in lung adenocarcinoma (LUAD). Differential expression analysis using TIMER and UALCAN tools was first employed to compare SFXNs expression levels between normal and LUAD tissues. Next, SFXNs' prognostic values, biological significance, and potential as immunotherapy candidates were examined from GEPIA, cBio-Portal, MetaCore, Cytoscape, and TIMER databases. It was found that all members of SFXN family, except SFXN3, were differentially expressed in LUAD compared to normal samples and within different stages of LUAD. Survival analysis then revealed SFXN1 to be related to worse overall survival outcome in patients with LUAD. Furthermore, several correlations between expression of SFXN1 and immune infiltration cells were discovered. To conclude, our study provides evidence of SFXN family gene's relevance to the prognosis and immunotherapeutic targets of LUAD.
引用
收藏
页码:1057 / 1072
页数:16
相关论文
共 52 条
  • [1] The mitochondrial carrier SFXN1 is critical for complex III integrity and cellular metabolism
    Acoba, Michelle Grace
    Alpergin, Ebru S. Selen
    Renuse, Santosh
    Fernandez-del-Rio, Lucia
    Lu, Ya-Wen
    Khalimonchuk, Oleh
    Clarke, Catherine F.
    Pandey, Akhilesh
    Wolfgang, Michael J.
    Claypool, Steven M.
    [J]. CELL REPORTS, 2021, 34 (11):
  • [2] Sideroflexin 3 is an α-synuclein-dependent mitochondrial protein that regulates synaptic morphology
    Amorim, Ines S.
    Graham, Laura C.
    Carter, Roderick N.
    Morton, Nicholas M.
    Hammachi, Fella
    Kunath, Tilo
    Pennetta, Giuseppa
    Carpanini, Sarah M.
    Manson, Jean C.
    Lamont, Douglas J.
    Wishart, Thomas M.
    Gillingwater, Thomas H.
    [J]. JOURNAL OF CELL SCIENCE, 2017, 130 (02) : 325 - 331
  • [3] [Anonymous], ORGANELLE FISSION GE
  • [4] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [5] Antibodies for profiling the human proteome-The Human Protein Atlas as a resource for cancer research
    Asplund, Anna
    Edqvist, Per-Henrik D.
    Schwenk, Jochen M.
    Ponten, Fredrik
    [J]. PROTEOMICS, 2012, 12 (13) : 2067 - 2077
  • [6] Characterization of Five Transmembrane Proteins: With Focus on the Tweety, Sideroflexin, and YIP1 Domain Families
    Attwood, Misty M. M.
    Schioth, Helgi B. B.
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2021, 9
  • [7] THE MITOCHONDRIAL TRICARBOXYLATE CARRIER
    AZZI, A
    GLERUM, M
    KOLLER, R
    MERTENS, W
    SPYCHER, S
    [J]. JOURNAL OF BIOENERGETICS AND BIOMEMBRANES, 1993, 25 (05) : 515 - 524
  • [8] Routine molecular profiling of patients with advanced non-small-cell lung cancer: results of a 1-year nationwide programme of the French Cooperative Thoracic Intergroup (IFCT)
    Barlesi, Fabrice
    Mazieres, Julien
    Merlio, Jean-Philippe
    Debieuvre, Didier
    Mosser, Jean
    Lena, Herve
    Ouafik, L'Houcine
    Besse, Benjamin
    Rouquette, Isabelle
    Westeel, Virginie
    Escande, Fabienne
    Monnet, Isabelle
    Lemoine, Antoinette
    Veillon, Remi
    Blons, Helene
    Audigier-Valette, Clarisse
    Bringuier, Pierre-Paul
    Lamy, Regine
    Beau-Faller, Michele
    Pujol, Jean-Louis
    Sabourin, Jean-Christophe
    Penault-Llorca, Frederique
    Denis, Marc G.
    Lantuejoul, Sylvie
    Morin, Franck
    Quan Tran
    Missy, Pascale
    Langlais, Alexandra
    Milleron, Bernard
    Cadranel, Jacques
    Soria, Jean-Charles
    Zalcman, Gerard
    [J]. LANCET, 2016, 387 (10026) : 1415 - 1426
  • [9] The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
    Barretina, Jordi
    Caponigro, Giordano
    Stransky, Nicolas
    Venkatesan, Kavitha
    Margolin, Adam A.
    Kim, Sungjoon
    Wilson, Christopher J.
    Lehar, Joseph
    Kryukov, Gregory V.
    Sonkin, Dmitriy
    Reddy, Anupama
    Liu, Manway
    Murray, Lauren
    Berger, Michael F.
    Monahan, John E.
    Morais, Paula
    Meltzer, Jodi
    Korejwa, Adam
    Jane-Valbuena, Judit
    Mapa, Felipa A.
    Thibault, Joseph
    Bric-Furlong, Eva
    Raman, Pichai
    Shipway, Aaron
    Engels, Ingo H.
    Cheng, Jill
    Yu, Guoying K.
    Yu, Jianjun
    Aspesi, Peter, Jr.
    de Silva, Melanie
    Jagtap, Kalpana
    Jones, Michael D.
    Wang, Li
    Hatton, Charles
    Palescandolo, Emanuele
    Gupta, Supriya
    Mahan, Scott
    Sougnez, Carrie
    Onofrio, Robert C.
    Liefeld, Ted
    MacConaill, Laura
    Winckler, Wendy
    Reich, Michael
    Li, Nanxin
    Mesirov, Jill P.
    Gabriel, Stacey B.
    Getz, Gad
    Ardlie, Kristin
    Chan, Vivien
    Myer, Vic E.
    [J]. NATURE, 2012, 483 (7391) : 603 - 607
  • [10] BERGHMANS T, 2020, EUR RESPIR J, V55