Methylobacterium terrae sp. nov., a radiation-resistant bacterium isolated from gamma ray-irradiated soil

被引:24
作者
Kim, Jiyoun [1 ]
Chhetri, Geeta [1 ]
Kim, Inhyup [1 ]
Kim, Hyungdong [1 ]
Kim, Myung Kyum [2 ]
Seo, Taegun [1 ]
机构
[1] Dongguk Univ, Dept Life Sci, Goyang 10326, South Korea
[2] Seoul Womens Univ, Dept Bio & Environm Technol, Coll Nat Sci, Seoul 01797, South Korea
基金
新加坡国家研究基金会;
关键词
Methylobacterium; new taxon; gamma ray-resistance; phylogenetic analysis; cell morphology; LEAF; DNA; GENUS;
D O I
10.1007/s12275-019-9007-9
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, asporogenous, aerobic rods, motile by means of a single polar flagellum, catalase- and oxidase-positive, methylotrophic bacterium, designated 17Sr1-28(T), was isolated from gamma ray-irradiated soil. The 16S rRNA gene sequence analysis showed that strain 17Sr1-28(T) was phylogenetically related to Methylobacterium currus PR1016A(T) (96.8%), Methylobacterium platani PMB02(T) (96.2%), Methylobacterium aquaticum DSM 16371(T) (96.3%), Methylobacterium tarhaniae N4211(T) (96.4%), Methylobacterium frigidaeris IER25-16(T) (95.8%), and Methylobacterium organophilum JCM 2833(T) (92.7%). The G+C content calculated based on genome sequence was 71.6%. The average nucleotide identity and in silico DNA-DNA hybridization values between strain 17Sr128(T) and M. currus, M. platani, M. aquaticum, M. tarhaniae, M. frigidaeris, and M. organophilum were 77.7-90.4% and 22-39.6%, respectively. The major fatty acids of strain 17Sr128(T) were summed feature 8 (C-18:1 omega 7c and/or C-18:1 omega 6c), and summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c). The predominant quinone was ubiquinone 10 and the major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, and phosphatidylglycerol. On the basis of the data from phenotypic tests and genotypic differences between strain 17Sr1-28(T) and its close phylogenetic relatives, strain 17Sr1-28(T) represents a new species belonging to the genus Methylobacterium, for which the name Methylobacterium terrae sp. nov. (= KCTC 52904(T) = NBRC 112873(T)) is proposed.
引用
收藏
页码:959 / 966
页数:8
相关论文
共 49 条
[1]  
[Anonymous], 2013, The Prokaryotes, DOI 10.1007/978-3-642-30141-4_68
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates [J].
Beck, David A. C. ;
McTaggart, Tami L. ;
Setboonsarng, Usanisa ;
Vorobev, Alexey ;
Goodwin, Lynne ;
Shapiro, Nicole ;
Woyke, Tanja ;
Kalyuzhnaya, Marina G. ;
Lidstrom, Mary E. ;
Chistoserdova, Ludmila .
ENVIRONMENTAL MICROBIOLOGY, 2015, 17 (03) :547-554
[4]  
Breznak JA, 2007, Methods for General and Molecular Bacteriology, P309, DOI DOI 10.1128/9781555817497
[5]   NON-STAINING (KOH) METHOD FOR DETERMINATION OF GRAM REACTIONS OF MARINE-BACTERIA [J].
BUCK, JD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1982, 44 (04) :992-993
[6]   Methylobacterium soli sp nov a methanol-utilizing bacterium isolated from the forest soil [J].
Cao, Yan-Ru ;
Wang, Qian ;
Jin, Rong-Xian ;
Tang, Shu-Kun ;
Jiang, Yi ;
He, Wen-Xiang ;
Lai, Hang-Xian ;
Xu, Li-Hua ;
Jiang, Cheng-Lin .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2011, 99 (03) :629-634
[7]   Flavobacterium edaphi sp. nov., isolated from soil from Jeju Island, Korea [J].
Chhetri, Geeta ;
Yang, Dahye ;
Choi, Jiwon ;
Kim, Hyungdong ;
Seo, Taegun .
ARCHIVES OF MICROBIOLOGY, 2019, 201 (04) :539-545
[8]   Modularity of methylotrophy, revisited [J].
Chistoserdova, Ludmila .
ENVIRONMENTAL MICROBIOLOGY, 2011, 13 (10) :2603-2622
[9]   DISTRIBUTION OF ISOPRENOID QUINONE STRUCTURAL TYPES IN BACTERIA AND THEIR TAXONOMIC IMPLICATIONS [J].
COLLINS, MD ;
JONES, D .
MICROBIOLOGICAL REVIEWS, 1981, 45 (02) :316-354
[10]   Deinococcus radiodurans -: The consummate survivor [J].
Cox, MM ;
Battista, JR .
NATURE REVIEWS MICROBIOLOGY, 2005, 3 (11) :882-892