Proposal of Lactococcus garvieae subsp. bovis Varsha and Nampoothiri 2016 as a later heterotypic synonym of Lactococcus formosensis Chen et al. 2014 and Lactococcus formosensis subsp. bovis comb. nov.

被引：4

作者：

Zhang, Hong Xia ^{[1
]}

Tian, Wen Li ^{[2
]}

Gu, Chun Tao ^{[1
]}

机构：

[1] Northeast Agr Univ, Coll Life Sci, Harbin 150030, Peoples R China

[2] Chinese Acad Agr Sci, Inst Apicultural Res, Beijing 100093, Peoples R China

来源：

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 2021年 / 71卷 / 08期

基金：

中国国家自然科学基金;

关键词：

genome; Lactococcus garvieae subsp. bovis; Lactococcus formosensis; reclassification; MICROBIAL GENOMES; SEQUENCE-ANALYSIS; IDENTIFICATION; PHES; RPOA; DELINEATION; ALGORITHM; TAXONOMY;

D O I：

10.1099/ijsem.0.004980

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Currently, Lactococcus garvieae contains two subspecies: L. garvieae subsp. bovis and L. garvieae subsp. garvieae. In a study by Varsha and Nampoothiri, high pheS (99.7%) and rpoA (99.6%) sequence similarities indicated that L. garvieae subsp. bovis and Lactococcus formosensis probably have a close taxonomic relationship; low pheS (92.2%) and rpoA (97.8%) sequence similarities and relatively low DNA-DNA hybridization value (75.8%) indicated that L. garvieae subsp. bovis and L. garvieae subsp. garvieae probably represent two different species. In the present study, the taxonomic relationships between L garvieae subsp. bovis, L garvieae subsp. garvieae and L formosensis were re-examined based on sequence analyses of 16S rRNA, pheS, recA, rpoA and rpoB genes, average nucleotide identity (ANI), digital DNA-DNA hybridization (dDDH) values, average amino acid identity (AAI), fatty acid methyl ester analysis and phenotypic characterization. L. garvieae subsp. bovis LMG 30663(T) exhibited 97.3% ANI. 78.3% dDDH and 96.4% AAI values to L. formosensis NBRC 109475(T), higher than the threshold for species demarcation (95-96, 70 and 95-96%, respectively), indicating that L garvieae subsp. bovis LMG 30663(T) and L. formosensis NBRC 109475(T) belong to the same species. L. garvieae subsp. bovis LMG 30663(T) had 91.2% ANI, 43.3% dDDH and 92.9-93.0% AA! values with the type strain of L. garvieae subsp. garvieae, indicating that they represent two different species. Because L. formosensis has been proposed and validated before L garvieae subsp. bovis. L. garvieae subsp. bovis is transferred to L. formosensis as L. formosensis subsp. bovis comb. nov. The type strain of L. formosensis subsp. bovis is BSN307(T) (=DSM 10057(T)=MCC 2824(T) =KCIC 21083(T)=LMG 30663(T)). The type strain of L formosensis subsp. formosensis is 516(T) (=NBRC 109475(T) =BCRC 80576(T)).

引用

页数：7

共 11 条

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[8] Elevation of Francisella philomiragia subsp noatunensis Mikalsen et al. (2007) to Francisella noatunensis comb. nov [syn. Francisella piscicida Ottem et al. (2008) syn. nov.] and characterization of Francisella noatunensis subsp. orientalis subsp nov., two important fish pathogens
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