Parameters affecting the X-ray dose absorbed by macromolecular crystals

被引:65
作者
Murray, JW
Rudiño-Piñera, E
Owen, RL
Grininger, M
Ravelli, RBG
Garman, EF
机构
[1] Univ Oxford, Dept Biochem, Lab Mol Biophys, Oxford OX1 3QU, England
[2] Univ Nacl Autonoma Mexico, Inst Biotecnol, Dept Med Mol & Bioproc, Cuernavaca 62271, Morelos, Mexico
[3] Max Planck Inst Biochem, D-82152 Martinsried, Germany
[4] European Mol Biol Lab, Grenoble Outstn, F-38042 Grenoble, France
关键词
absorbed dose; Henderson limit; X-ray diffraction; radiation damage; dodecin;
D O I
10.1107/S0909049505003262
中图分类号
TH7 [仪器、仪表];
学科分类号
0804 ; 080401 ; 081102 ;
摘要
The lifetime of a macromolecular crystal in an X-ray beam is assumed to be limited by the absorbed dose. This dose, expressed in Gray (Gy = J kg(-1)), is a function of a number of parameters: the absorption coefficients of the constituent atoms of the crystal, the number of molecules per asymmetric unit, the beam energy, flux, size and profile, the crystal size, and the total irradiation time. The effects of these variables on the predicted absorbed dose, calculated using the program RADDOSE, are discussed and are illustrated with reference to the irradiation of a selenomethionine protein crystal of unknown structure. The results of RADDOSE can and will in the future be used to inform the data collection procedure as it sets a theoretical upper limit on the total exposure time at a certain X-ray source. However, as illustrated with an example for which the experimental data are compared with prediction, the actual lifetime of a crystal could become shorter in those cases where specific damage breaks down crucial crystal contacts.
引用
收藏
页码:268 / 275
页数:8
相关论文
共 26 条
  • [1] Using image analysis for automated crystal positioning in a synchrotron X-ray beam for high-throughput macromolecular crystallography
    Andrey, P
    Lavault, B
    Cipriani, F
    Maurin, Y
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2004, 37 : 265 - 269
  • [2] OPTIMUM X-RAY WAVELENGTH FOR PROTEIN CRYSTALLOGRAPHY
    ARNDT, UW
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1984, 17 (APR) : 118 - 119
  • [3] ARZT S, 2004, IN PRESS PROG BIOPHY
  • [4] Crystal structure of halophilic dodecin:: A novel, dodecameric flavin binding protein from Halobacterium salinarum
    Bieger, B
    Essen, LO
    Oesterhelt, D
    [J]. STRUCTURE, 2003, 11 (04) : 375 - 385
  • [5] Structural changes in a cryo-cooled protein crystal owing to radiation damage
    Burmeister, WP
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 : 328 - 341
  • [6] CHOOCH:: a program for deriving anomalous-scattering factors from X-ray fluorescence spectra
    Evans, G
    Pettifer, RF
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2001, 34 : 82 - 86
  • [7] TREATMENT OF NEGATIVE INTENSITY OBSERVATIONS
    FRENCH, S
    WILSON, K
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1978, 34 (JUL): : 517 - 525
  • [8] Heavy-atom derivatization
    Garman, E
    Murray, JW
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2003, 59 : 1903 - 1913
  • [9] Leaving no element of doubt: analysis of proteins using microPIXE
    Garman, E
    [J]. STRUCTURE WITH FOLDING & DESIGN, 1999, 7 (12): : R291 - R299
  • [10] Characterization of conditions required for x-ray diffraction experiments with protein microcrystals
    Glaeser, R
    Facciotti, M
    Walian, P
    Rouhani, S
    Holton, J
    MacDowell, A
    Celestre, R
    Cambie, D
    Padmore, H
    [J]. BIOPHYSICAL JOURNAL, 2000, 78 (06) : 3178 - 3185