Peak fitting in 2D 1H-13C HSQC NMR spectra for metabolomic studies

被引:9
|
作者
McKenzie, James S. [2 ,3 ]
Charlton, Adrian J. [2 ]
Donarski, James A. [2 ]
MacNicoll, Alan D. [2 ]
Wilson, Julie C. [1 ,3 ]
机构
[1] Univ York, Dept Math, York YO10 5DD, N Yorkshire, England
[2] Food & Environm Res Agcy, York YO41 1LZ, N Yorkshire, England
[3] Univ York, Dept Chem, York YO10 5DD, N Yorkshire, England
关键词
2D H-1-C-13 HSQC NMR; Peak modelling; Lorentzian; Metabolomics; Classification; Metabolites; MAGNETIC-RESONANCE-SPECTROSCOPY; H-1-NMR SPECTROSCOPY; ARABIDOPSIS-THALIANA; PRINCIPAL-COMPONENTS; COMPLEX; SPECTROMETRY; METABOLITES; URINE; IDENTIFICATION; ENHANCEMENT;
D O I
10.1007/s11306-010-0226-7
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
A modified Lorentzian distribution function is used to model peaks in two-dimensional (2D) H-1-C-13 heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectra. The model fit is used to determine accurate chemical shifts from genuine signals in complex metabolite mixtures such as blood. The algorithm can be used to extract features from a set of spectra from different samples for exploratory metabolomics. First a reference spectrum is created in which the peak intensities are given by the median value over all samples at each point in the 2D spectra so that H-1-C-13 correlations in any spectra are accounted for. The mathematical model provides a footprint for each peak in the reference spectrum, which can be used to bin the H-1-C-13 correlations in each HSQC spectrum. The binned intensities are then used as variables in multivariate analyses and those found to be discriminatory are rapidly identified by cross referencing the chemical shifts of the bins with a database of C-13 and H-1 chemical shift correlations from known metabolites.
引用
收藏
页码:574 / 582
页数:9
相关论文
共 50 条
  • [1] Peak fitting in 2D 1H–13C HSQC NMR spectra for metabolomic studies
    James S. McKenzie
    Adrian J. Charlton
    James A. Donarski
    Alan D. MacNicoll
    Julie C. Wilson
    Metabolomics, 2010, 6 : 574 - 582
  • [2] Removal of t1 noise from metabolomic 2D 1H-13C HSQC NMR spectra by Correlated Trace Denoising
    Poulding, Simon
    Charlton, Adrian J.
    Donarski, James
    Wilson, Julie C.
    JOURNAL OF MAGNETIC RESONANCE, 2007, 189 (02) : 190 - 199
  • [3] Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
    Tommy Öman
    May-Britt Tessem
    Tone F Bathen
    Helena Bertilsson
    Anders Angelsen
    Mattias Hedenström
    Trygve Andreassen
    BMC Bioinformatics, 15
  • [4] Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
    Oman, Tommy
    Tessem, May-Britt
    Bathen, Tone F.
    Bertilsson, Helena
    Angelsen, Anders
    Hedenstrom, Mattias
    Andreassen, Trygve
    BMC BIOINFORMATICS, 2014, 15
  • [5] Evaluation of Non-Uniform Sampling 2D 1H-13C HSQC Spectra for Semi-Quantitative Metabolomics
    Zhang, Bo
    Powers, Robert
    O'Day, Elizabeth M.
    METABOLITES, 2020, 10 (05)
  • [6] MetaboQuant: a tool combining individual peak calibration and outlier detection for accurate metabolite quantification in 1D 1H and 1H-13C HSQC NMR spectra
    Klein, Matthias S.
    Oefner, Peter J.
    Gronwald, Wolfram
    BIOTECHNIQUES, 2013, 54 (05) : 251 - +
  • [7] Cutting without a Knife: A Slice-Selective 2D 1H-13C HSQC NMR Sequence for the Analysis of Inhomogeneous Samples
    Lysak, Daniel H.
    Bermel, Wolfgang
    Moxley-Paquette, Vincent
    Michal, Carl
    Ghosh-Biswas, Rajshree
    Soong, Ronald
    Nashman, Ben
    Lacerda, Andressa
    Simpson, Andre J.
    ANALYTICAL CHEMISTRY, 2023, 95 (38) : 14392 - 14401
  • [8] Combined 1H-NMR and 1H-13C HSQC-NMR to improve urinary screening in autism spectrum disorders
    Nadal-Desbarats, Lydie
    Aidoud, Nacima
    Emond, Patrick
    Blasco, Helene
    Filipiak, Isabelle
    Sarda, Pierre
    Bonnet-Brilhault, Frederique
    Mavel, Sylvie
    Andres, Christian R.
    ANALYST, 2014, 139 (13) : 3460 - 3468
  • [9] Precise and rapid isotopomic analysis by 1H-13C 2D NMR: Application to triacylglycerol matrices
    Merchak, Noelle
    Silvestre, Virginie
    Rouger, Laetitia
    Giraudeau, Patrick
    Rizk, Toufic
    Bejjani, Joseph
    Akoka, Serge
    TALANTA, 2016, 156 : 239 - 244
  • [10] Spatially encoded polarization transfer for improving the quantitative aspect of 1H-13C HSQC
    Baishya, Bikash
    Verma, Rajeev
    Parihar, Rashmi
    JOURNAL OF MAGNETIC RESONANCE OPEN, 2022, 12-13